Evidence map›Paper›PMID 42717245›Full record

ArticleNature cell biology2026

The periphery of nuclear speckles defines a spatially and temporally regulated compartment of long-lived intron-retained RNAs that resolves during mitosis.

Josep Biayna, Artem Baranovskii, Anusha Chaudhuri, Marta Paladin, Berkay Erdem, Luise-Elektra Keller, A Rasim Barutcu, Stefanie Dimmeler, Annalisa Marsico, Gabrijela Dumbović

Abstract read
In one paragraph

Article in Nature cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Josep Biayna *Goethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-0842-7530
Artem Baranovskii *Computational Health Center, Helmholtz Center Munich, Munich, Germany.
Anusha ChaudhuriGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-7263-9204
Marta PaladinGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.ORCID http://orcid.org/0009-0003-5657-2729
Berkay ErdemGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.
Luise-Elektra KellerGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.
A Rasim BarutcuScitoVation LLC, Durham, NC, USA.
Stefanie DimmelerGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-1045-2436
Annalisa MarsicoComputational Health Center, Helmholtz Center Munich, Munich, Germany.
Gabrijela DumbovićGoethe University Frankfurt, Center for Molecular Medicine, Institute of Cardiovascular Regeneration, Frankfurt, Germany. dumbovic@med.uni-frankfurt.de.ORCID http://orcid.org/0000-0002-1278-0273

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 03ZU1201AADeutsche Forschungsgemeinschaft (German Research Foundation) 390649896Deutsche Forschungsgemeinschaft (German Research Foundation) 403584255Deutsche Forschungsgemeinschaft (German Research Foundation) 562550297
6 · The paper itself

Abstract

RNA localization adds a fundamental layer to gene expression by determining when and where translation-ready mRNAs become available, yet how this timing is coordinated with nuclear architecture and cell-cycle progression remains unclear. Here we identify a subnuclear RNA niche at the nuclear speckle periphery that couples intron retention to cell-cycle-timed RNA release. Using compartment-resolved transcriptional inhibition, sequence-based deep learning and single-molecule and super-resolution RNA imaging in human pluripotent stem cells, we define a class of nuclear RNAs with long-lived retained introns that persist for hours and are enriched in transcripts encoding regulators of genome maintenance and mitosis, including centromere and kinetochore assembly, DNA repair and telomere maintenance. Long-lived retained introns exhibit elevated GC content, predicted structural stability and enrichment for nuclear speckle-associated RNA-binding proteins. In interphase, these RNAs localize to a distinct nuclear speckle-peripheral RNA niche in a spatial arrangement conserved across cell types. During mitotic remodelling, they undergo coordinated, kinase-dependent splicing and are released into the cytoplasm of early G1 daughter cells. Together, these findings link cis-encoded intronic features, subnuclear organization and mitotic remodelling to temporal control of RNA fate.

Indexed as

Cell NucleusIntronsMitosisRNAHumansRNA-Binding ProteinsRNA SplicingRNARNA-Binding Proteins

Identifiers

PMID42717245
PMCPMC13561874

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.