Evidence map›Paper›PMID 42711428›Full record

ArticleNature genetics2026

Cohesin prevents local mixing of condensed euchromatic domains in living human cells.

Masa A Shimazoe, Shiori Iida, Katsuhiko Minami, Koichi Higashi, Sachiko Tamura, Yoshiaki Kobayashi, Shin Fujishiro, Le Xiong, Kako Nakazato, S S Ashwin and 12 more

Abstract read
In one paragraph

Article in Nature genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Chromatin Packing Domain Engineering Through the Manipulation of Nuclear Cationic States.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Genome-wide absolute quantification of chromatin looping.Nature structural & molecular biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Masa A Shimazoe *Genome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.ORCID http://orcid.org/0000-0002-2018-0497
Shiori Iida *Genome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.ORCID http://orcid.org/0000-0002-1115-4705
Katsuhiko Minami *Genome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.
Koichi Higashi *Graduate Institute for Advanced Studies, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.ORCID http://orcid.org/0000-0002-8970-2652
Sachiko TamuraGenome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.
Yoshiaki KobayashiDivision of Gene Expression Dynamics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-9585-7255
Shin FujishiroFukui Institute for Fundamental Chemistry, Kyoto University, Kyoto, Japan.
Le XiongDepartment of Cancer Biology, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.
Kako NakazatoGenome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.
S S AshwinDepartment of Physics, Gandhi Institute of Technology and Management (GITAM) University, Bengaluru, India.
Tomoko NishiyamaDivision of Biological Sciences, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0002-8349-6536
Yu NagataGenome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.ORCID http://orcid.org/0009-0007-3130-4954
Masato T KanemakiGraduate Institute for Advanced Studies, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.ORCID http://orcid.org/0000-0002-7657-1649
Akane KawaguchiGraduate Institute for Advanced Studies, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.
Yasuyuki OhkawaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0001-6440-9954
Lothar SchermellehDepartment of Biochemistry, University of Oxford, Oxford, UK.
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan.ORCID http://orcid.org/0000-0002-0728-7548
Liangqi XieDepartment of Cancer Biology, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.ORCID http://orcid.org/0000-0002-6546-9622
Ken KurokawaGraduate Institute for Advanced Studies, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.ORCID http://orcid.org/0000-0001-8662-9958
Hiroshi OchiaiDivision of Gene Expression Dynamics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-2200-1325
Masaki SasaiFukui Institute for Fundamental Chemistry, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0002-1028-8242
Kazuhiro MaeshimaGenome Dynamics Laboratory, National Institute of Genetics, ROIS, Mishima, Japan. kmaeshim@nig.ac.jp.ORCID http://orcid.org/0000-0003-3909-0341

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 20H05937MEXT | Japan Society for the Promotion of Science (JSPS) 21H04767MEXT | Japan Society for the Promotion of Science (JSPS) 23KJ0996MEXT | Japan Society for the Promotion of Science (JSPS) 24KJ1161MEXT | Japan Society for the Promotion of Science (JSPS) JP22H04925MEXT | Japan Society for the Promotion of Science (JSPS) JP23K17398MEXT | Japan Society for the Promotion of Science (JSPS) JP23KJ0998MEXT | Japan Society for the Promotion of Science (JSPS) JP24H02326MEXT | Japan Society for the Promotion of Science (JSPS) JP25K24664
6 · The paper itself

Abstract

The human genome is folded into chromatin loops by the cohesin complex, forming functional chromatin domains that underlie transcription and DNA replication/repair. However, how cohesin organizes these domains in living cells, especially in active euchromatin, remains elusive. Here, to address this question, we combined single-nucleosome imaging/tracking and super-resolution three-dimensional structured illumination microscopy with euchromatin-specific labeling of histone variant H3.3. Using this nanoscopic approach, we revealed that euchromatin forms condensed domains that are constrained by cohesin-mediated loops. This organization refines the classical view of euchromatin as largely open, in line with emerging evidence. Transcription machinery appears to be located near the condensed domain surfaces/borders. Cohesin loss increased nucleosome-level fluidity within these domains without altering their overall compaction, leading to local mixing of domains and compromising transcriptional insulation. These findings suggest a physical role of cohesin in maintaining the integrity of condensed euchromatic domains and ensuring proper higher-order regulation of gene expression.

Indexed as

Cell Cycle ProteinsChromosomal Proteins, Non-HistoneEuchromatinChromatinCohesinsHistonesHumansNucleosomesTranscription, GeneticCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsEuchromatinHistonesNucleosomes

Identifiers

PMID42711428
PMCPMC13553310

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.