Evidence map›Paper›PMID 42708589›Full record

ArticleMicrobiology spectrum2026

Impacts of flooding on agricultural soil microbiome.

Eva Kilcoyne, Shauna O'Shea, Meghana Srinivas, Tatiana Garrido Gil, André Sousa, Ana Sofia Rodrigues Dos Santos, Sophia Rosencrantz, Sophia Westphal, Stefanie Bär, Verena Jentzen and 3 more

Abstract read
In one paragraph

Article in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Eva KilcoyneNational University of Ireland, Maynooth, Kildare, Ireland.ORCID 0009-0007-4358-9635
Shauna O'SheaNational University of Ireland, Maynooth, Kildare, Ireland.
Meghana SrinivasNational University of Ireland, Maynooth, Kildare, Ireland.
Tatiana Garrido GilInstituto de Tecnologia Química e Biologica (ITQB)-NOVA, iPlantMicro Lab, Oeiras, Lisboa, Portugal.
André SousaInstituto de Tecnologia Química e Biologica (ITQB)-NOVA, iPlantMicro Lab, Oeiras, Lisboa, Portugal.
Ana Sofia Rodrigues Dos SantosInstituto de Tecnologia Química e Biologica (ITQB)-NOVA, iPlantMicro Lab, Oeiras, Lisboa, Portugal.
Sophia RosencrantzFraunhofer Institute for Applied Polymer Research IAP, Potsdam, Germany.
Sophia WestphalFraunhofer Institute for Applied Polymer Research IAP, Potsdam, Germany.
Stefanie BärFraunhofer Institute for Applied Polymer Research IAP, Potsdam, Germany.
Verena JentzenFraunhofer Institute for Applied Polymer Research IAP, Potsdam, Germany.
Juan Ignacio VilchezInstituto de Tecnologia Química e Biologica (ITQB)-NOVA, iPlantMicro Lab, Oeiras, Lisboa, Portugal.
Ruben RosencrantzFraunhofer Institute for Applied Polymer Research IAP, Potsdam, Germany.
Fiona WalshNational University of Ireland, Maynooth, Kildare, Ireland.

Funding

Department of Agriculture, Food and the Marine, Ireland EU/2021EJPSOILEN304_WALSH R
6 · The paper itself

Abstract

As a result of climate change, increased flooding events have been recorded across the globe. The role of soil microbiomes in soil health and fertility is well recognized, as these microbial communities drive essential processes such as nutrient cycling, organic matter decomposition, and plant health. The composition and function of these communities can be highly sensitive to environmental changes. The aim of this study is to identify the impacts of flooding on soil microbiome composition and diversity. Paired flooded and non-flooded agricultural soils were collected from Germany, Ireland, and Portugal, and characterized using full-length 16S rRNA gene and ITS amplicon sequencing. Following false-discovery-rate correction, flooding was not associated with significant differences in bacterial or fungal alpha diversity. In contrast, paired PERMANOVA detected small overall effects of flooding on bacterial Bray-Curtis, Jaccard, and unweighted UniFrac distances, and on fungal Bray-Curtis and Jaccard distances, although community composition was structured more strongly by country. At the taxonomic level,

Indexed as

BacteriaFloodsFungiMicrobiotaSoil MicrobiologyAgricultureBiodiversityClimate ChangeGermanyIrelandPortugalRNA, Ribosomal, 16SSoilRNA, Ribosomal, 16SSoil16S rRNA amplicon sequencingclimate changesoil floodingsoil microbiome

Identifiers

PMID42708589
PMCPMC13688923

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.