Evidence map›Paper›PMID 42708362›Full record

ArticleJCI insight2026

Human Y chromosome pan-organ mapping reveals progressive mosaic loss from normal to cancer.

Arkadiusz Gertych, Huihui Ye, Xingyu Chen, Eric Vail, V Krishnan Ramanujan, Lauren Brady, Lawrence D True, Peter S Nelson, Peter R Carroll, Dan Theodorescu

Abstract read
In one paragraph

Article in JCI insight, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Arkadiusz GertychDepartment of Surgery.
Huihui YeDepartment of Pathology and Laboratory Medicine.
Xingyu ChenDepartment of Urology, and.
Eric VailDepartment of Pathology and Laboratory Medicine.
V Krishnan RamanujanDepartment of Pathology and Laboratory Medicine.
Lauren BradyFred Hutchinson Cancer Center, Seattle, Washington, USA.
Lawrence D TrueDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA.
Peter S NelsonFred Hutchinson Cancer Center, Seattle, Washington, USA.
Peter R CarrollDepartment of Urology, UCSF, San Francisco, California, USA.
Dan TheodorescuDepartment of Pathology and Laboratory Medicine.

Funding

TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
Steroid Metabolism in Castration-Resistant Prostate CancerP01CA163227 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI PETER S NELSON · 2013 to 2026
$25.0M
Understanding and Exploiting Loss of Y in CancerR35CA294022 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 2025 to 2026
$1.9M
NCI NIH HHS P01 CA163227NCI NIH HHS P50 CA097186NCI NIH HHS R35 CA294022
6 · The paper itself

Abstract

backgroundLoss of the Y chromosome (LOY) is a frequent event in male tumors and has been linked to cancer progression. However, the degree of mosaic LOY (mLOY) within normal tissues from men with or without cancer remains uncharacterized.

methodsHere we used a FISH-based assay targeting X- and Y-chromosome centromeres to perform a pan-organ analysis of mLOY in 1,000 male tissue samples from 405 individuals representing 11 organs. Automated image processing generated a quantitative FISH-based mLOY score (YchrFISH) that we validated against a transcriptomic surrogate of Y-chromosome dosage from RNA-seq data.

resultsmLOY burden varied by tumor type, with highest degree in colorectal carcinoma. Across tissue groups, YchrFISH scores declined progressively from normal tissues of cancer-free men to histologically normal tissues adjacent to cancer and carcinoma (P < 0.0001). Paired analyses confirmed consistently greater mLOY in malignant compared with tumor-adjacent histologically normal tissue in different organs. Spatially resolved RNA-seq maps of bladders removed for cancer demonstrated a transcriptional gradient of Y-chromosome loss from normal urothelium through intraepithelial neoplasia to invasive carcinoma.

conclusionmLOY gradients exist across histologically normal and malignant tissues, consistent with the concept of field cancerization. Our findings support epithelial mLOY as a biomarker of early malignant transformation and, to our knowledge, a previously unrecognized hallmark of male oncogenesis.

fundingNIH grants R35CA294022, P01CA163227, and P50CA97186 (the Pacific Northwest Prostate Cancer SPORE) and the Institute for Prostate Cancer Research.

Indexed as

Chromosomes, Human, YMosaicismNeoplasmsHumansIn Situ Hybridization, FluorescenceMaleBiomarkersClinical ResearchGeneticsMolecular pathologyOncologyUrology

Identifiers

PMID42708362
PMCPMC13564088

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.