Evidence map›Paper›PMID 42693555›Full record

ArticleChemphyschem : a European journal of chemical physics and physical chemistry2026

Vibrational Spectra, Conformations, and Optical Rotation of Aqueous Amino Acids: Zwitterions of L-Alanine and L-Valine.

Sergey A Katsyuba, Timur I Burganov, Tatiana P Gerasimova, Thomas Froitzheim, Stefan Grimme

Abstract read
In one paragraph

Article in Chemphyschem : a European journal of chemical physics and physical chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

Sergey A KatsyubaArbuzov Institute of Organic and Physical Chemistry, Russian Academy of Sciences, Kazan, Russia.ORCID https://orcid.org/0000-0001-9196-9308
Timur I BurganovArbuzov Institute of Organic and Physical Chemistry, Russian Academy of Sciences, Kazan, Russia.ORCID https://orcid.org/0000-0002-3462-6760
Tatiana P GerasimovaArbuzov Institute of Organic and Physical Chemistry, Russian Academy of Sciences, Kazan, Russia.ORCID https://orcid.org/0000-0001-8473-5327
Thomas FroitzheimMulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Bonn, Germany.ORCID https://orcid.org/0000-0001-9853-0410
Stefan GrimmeMulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Bonn, Germany.ORCID https://orcid.org/0000-0002-5844-4371

Funding

Academy of Sciences of the Republic of Tatarstan 25-23-20097Russian Science Foundation 25-23-20097
6 · The paper itself

Abstract

We demonstrate that an efficient computational protocol for accurate quantum mechanical (QM) modeling of IR and Raman spectra of condensed-phase systems is applicable to aqueous zwitterions of L-alanine and L-valine. The approach is based on generating energetically low-lying cluster structures consisting of the solute surrounded by an explicit solvation shell, optimized at the DFT level. Such cluster models are shown to reliably reproduce experimental vibrational frequencies and relative IR and Raman intensities of both amino acids at the B3LYP-D3/def2-TZVP level, provided that 25 water molecules are included. The accuracy of the simulations is sufficient to resolve all three conformers of valine and to identify their spectroscopic signatures. Relative conformer populations are estimated from the experimental intensities of the corresponding conformational marker bands, and conformationally averaged optical rotations (OR) of valine are computed using several QM protocols for [α]

Indexed as

AlanineValineDensity Functional TheoryMolecular ConformationOptical RotationQuantum TheorySpectrophotometry, InfraredSpectrum Analysis, RamanVibrationWaterAlanineValineWaterdensity functional theoryexplicit and implicit solvationIR and Raman intensitiesoptical rotationtime dependent density functional theory

Identifiers

PMID42693555
PMCPMC13542343

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.