Evidence map›Paper›PMID 42690707›Full record

ReviewMicrobial genomics2026

Applications of transposon-insertion sequencing for understanding bacterial physiology.

Emily C A Goodall, Stineke van Houte

Abstract readReview
In one paragraph

Review in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Emily C A GoodallEnvironment and Sustainability Institute & Centre for Ecology and Conservation, University of Exeter, Penryn, TR10 9FE, UK.
Stineke van HouteEnvironment and Sustainability Institute & Centre for Ecology and Conservation, University of Exeter, Penryn, TR10 9FE, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposon-insertion sequencing (Tn-seq) couples transposon mutagenesis with next-generation sequencing to identify the transposon insertion site for thousands of mutants in parallel. It is a powerful technology with a myriad of uses beyond the identification of essential genes required for a cell to grow and divide. Tn-seq is particularly useful as a high-throughput method to assign function to function-unknown genes, which have increased steadily with the abundance of newly sequenced bacterial genomes. Tn-seq has now been adapted for use in over 100 bacterial species. Here, we summarize the applications of Tn-seq for querying bacterial physiology and discuss some of the possible applications for the future.

Indexed as

BacteriaBacterial Physiological PhenomenaDNA Transposable ElementsHigh-Throughput Nucleotide SequencingMutagenesis, InsertionalGenome, BacterialSequence Analysis, DNADNA Transposable Elementsfunctional genomicsINSeqTraDIStransposon-insertion sequencing (Tn-seq)transposon mutagenesis

Identifiers

PMID42690707
PMCPMC13541208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.