Evidence map›Paper›PMID 42683650›Full record

ReviewGut microbes2026

Protease-serpin-microbiome interactions in inflammatory bowel disease: toward integrated biomarkers of gut health.

Meshal Almalki, Camilla R De Pierri, Tristan Méric, Héla Mkaouar, Donia Slimani, Vincent Mariaule, Sirine Tebassi, Nizar Akermi, Emmanuelle Maguin, Juan Hernandez and 3 more

Abstract readReview
In one paragraph

Review in Gut microbes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Meshal AlmalkiUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Camilla R De PierriDepartment of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.
Tristan MéricUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Héla MkaouarUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Donia SlimaniUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Vincent MariauleUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.ORCID 0000-0003-2655-0580
Sirine TebassiUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Nizar AkermiUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Emmanuelle MaguinUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.ORCID 0000-0001-5452-3382
Juan HernandezUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Roberto T RaittzLaboratory of Artificial Intelligence Applied to Bioinformatics, Universidade Federal do Paraná, Curitiba, Brazil.
Moez RhimiUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, MIHA Team, Jouy-en-Josas, France.
Francesco AsnicarDepartment of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.ORCID 0000-0003-3732-1468

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteolytic imbalance involving host and microbial serine proteases and their inhibitors (serpins) contributes to intestinal barrier disruption and chronic inflammation in inflammatory bowel disease (IBD). However, the interplay among these components remains insufficiently characterized. Here, we survey 13,304 publications over five decades, to map protease-serpin-microbiome literature in IBD. Our analysis reveals a fragmented literature structure, with uneven coverage and limited cross-domain integration among host proteases, microbial proteases, and inhibitory pathways. We synthesize evidence linking these components to intestinal barrier integrity, mucosal immunity, extracellular-matrix remodeling, and microbial ecology. Considering the protease-serpin-microbiome axis may provide an integrative direction for future studies of IBD pathogenesis, including the investigation of mechanisms underlying disease heterogeneity, prioritizing future biomarker and therapeutic studies.

Indexed as

Gastrointestinal MicrobiomeInflammatory Bowel DiseasesPeptide HydrolasesSerine ProteasesSerpinsAnimalsBacteriaBiomarkersHumansImmunity, MucosalIntestinal Barrier FunctionIntestinal MucosaBiomarkersPeptide HydrolasesSerine ProteasesSerpinshost-microbiome axishuman gut microbiomeInflammatory bowel diseasesserine proteasesserpins

Identifiers

PMID42683650
PMCPMC13540094

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.