Evidence map›Paper›PMID 42681501›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Protocols for Standard and Advanced Visualization and Quantification of Leptospira Biofilms.

Grégoire Davignon, Malia Kainiu, Roman Thibeaux

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Grégoire DavignonInstitut Pasteur in New Caledonia, Institut Pasteur International Network, Leptospirosis Research and Expertise Unit, Noumea, New Caledonia.
Malia KainiuInstitut Pasteur in New Caledonia, Institut Pasteur International Network, Leptospirosis Research and Expertise Unit, Noumea, New Caledonia.
Roman ThibeauxInstitut Pasteur in New Caledonia, Institut Pasteur International Network, Leptospirosis Research and Expertise Unit, Noumea, New Caledonia. thibeaux@pasteur.nc.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of Leptospira spp. to form biofilms is increasingly recognized as a key factor in their environmental persistence and possibly in host colonization. In this chapter, we present a set of protocols for the in vitro growth, quantification, and structural characterization of Leptospira biofilms. We detail standard high-throughput approaches, such as crystal violet (CV) staining in 96-well microtiter plates, as well as an alternative based on phase contrast microscopy and image analysis. To probe biofilm architecture and composition, we describe advanced imaging methods including confocal laser scanning microscopy (CLSM) with fluorescent probes targeting viability or matrix components, and scanning electron microscopy (SEM) for high-resolution surface imaging. We also introduce a method for growing Leptospira biofilms on polycarbonate membranes, facilitating downstream structural analyses without disturbing their spatial organization. Together, these protocols provide a robust and adaptable toolbox for investigating the development and complexity of Leptospira biofilms.

Indexed as

BiofilmsLeptospiraFluorescent DyesGentian VioletMicroscopy, ConfocalMicroscopy, Electron, ScanningMicroscopy, Phase-ContrastStaining and LabelingFluorescent DyesGentian Violet96-well plateBiofilmConfocal laser scanning microscopy (CLSM)Crystal violet assayIn vitro modelPhase contrast microscopyQuantificationScanning electron microscopy (SEM)

Identifiers

PMID42681501

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.