Evidence map›Paper›PMID 42671916›Full record

ArticleCell reports2026

Streptococcus pyogenes carriage is associated with distinct in vivo transcriptional states but not carrier-specific genotypes.

Nicholas Faiola, Jason M Wood, Nicole Casab, May Xu, Kevin Quirk, Christopher Thomas, Eliza Klos, Jordan Thesier, Mitchell Waldran, Mark Maienschein-Cline and 4 more

Abstract read
In one paragraph

Article in Cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Nicholas FaiolaDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Jason M WoodResearch Informatics Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL, USA.
Nicole CasabDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
May XuDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Kevin QuirkDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Christopher ThomasDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Eliza KlosDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Jordan ThesierDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Mitchell WaldranDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA.
Mark Maienschein-ClineResearch Informatics Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL, USA.
Michael J FederleDepartment of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, Chicago, IL, USA.
Gregory P DeMuriDepartment of Pediatrics, Division of Infectious Diseases, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Ellen R WaldDepartment of Pediatrics, Division of Infectious Diseases, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Laura C CookDepartment of Biological Sciences, Binghamton Biofilm Research Center, Binghamton University, Binghamton, NY, USA. Electronic address: lcook@binghamton.edu.

Funding

Transcriptomic and Genetic Differences of Group A Streptococcus in Humans: Acute Infection versus CarriageR21AI147502 · NIAID · STATE UNIVERSITY OF NY,BINGHAMTON · PI COOK, LAURA CAROL CASE, WALD, ELLEN · 2019 to 2020
$456k
NIAID NIH HHS R21 AI147502
6 · The paper itself

Abstract

Group A Streptococcus (GAS) is a major human pathogen causing extensive global morbidity. While the asymptomatic carrier state challenges clinical management and contributes to community transmission, genomic, and transcriptomic analyses of naturally acquired human GAS carriage have been lacking. In this study, samples are collected from individuals before and after treatment for acute GAS pharyngitis. Selected isolates undergo whole-genome sequencing and RNA sequencing, providing transcriptional profiling of GAS directly from human-derived oropharyngeal swabs. Genomic analysis reveals no consistent carrier-specific genotypes, and in vitro assays show no major differences in biofilm formation or antibiotic susceptibility between carrier and non-carrier isolates. However, in vivo transcriptional profiling identifies distinct gene expression patterns when comparing acute infection and post-treatment carriage phases, though acute-phase profiles do not predict treatment failure. These findings suggest GAS carriage is influenced by both bacterial traits and host factors, advancing our understanding of persistence and transmission.

Indexed as

Carrier StateStreptococcal InfectionsStreptococcus pyogenesTranscription, GeneticBiofilmsGene Expression Regulation, BacterialGenome, BacterialGenotypeHumansPharyngitisWhole Genome SequencingCP: Microbiologystreptococcal carriageStreptococcal pharyngitistranscriptional profilingwhole genome sequencing

Identifiers

PMID42671916
PMCPMC13671490

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.