Evidence map›Paper›PMID 42658683›Full record

ArticleSTAR protocols2026

Protocol for analyzing slow cortical dynamics in mouse neuronal recordings.

Yuriy Shymkiv, Rafael Yuste

Abstract read
In one paragraph

Article in STAR protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuriy ShymkivNeurotechnology Center, Department of Biological Sciences, Columbia University, New York, NY, USA. Electronic address: ys2605@columbia.edu.
Rafael YusteNeurotechnology Center, Department of Biological Sciences, Columbia University, New York, NY, USA.

Funding

Reexamining the Role of Dendrites in Neuronal FunctionRM1NS132981 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Jayeeta Basu, RAFAEL YUSTE · 2023 to 2026
$10.3M
Training in Schizophrenia and Psychotic Disorders: From Animal Models to PatientsT32MH018870 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Guillermo Horga, Christoph Kellendonk · 1988 to 2026
$9.8M
Effect of GABAergic inhibition of dendritic spines on synaptic pruning in the medial prefrontal cortex during adolescenceR01MH115900 · NIMH · SUNY DOWNSTATE MEDICAL CENTER · PI SMITH, SHERYL S · 2019 to 2023
$3.2M
Mechanisms of Neuronal Ensembles in Visual CortexR01EY035248 · NEI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI RAFAEL YUSTE · 2024 to 2026
$1.7M
Holographic imprinting of novelty detection in miceF31MH122137 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHYMKIV, YURIY · 2019 to 2021
$137k
NEI NIH HHS R01 EY035248NIMH NIH HHS F31 MH122137NIMH NIH HHS R01 MH115900NIMH NIH HHS T32 MH018870NINDS NIH HHS RM1 NS132981
6 · The paper itself

Abstract

Temporal information processing is critical for brain function, supporting neural computations such as novelty detection, adaptation, and temporal normalization. Its disruption is implicated in schizophrenia. We present a protocol for analyzing ongoing neuronal network activity using binwise decoding, trial-to-trial variability analysis, and estimation of network-intrinsic timescales (INTs). We apply these techniques to identify slow dynamics that encode the memory of recent stimuli in neuronal populations in the mouse auditory cortex and in artificial neural networks trained on a novelty-detection task. For complete details on the use and execution of this protocol, please refer to Shymkiv et al.

Indexed as

Cognitive NeuroscienceComputer sciencesNeuroscience

Identifiers

PMID42658683
PMCPMC13544393

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.