Evidence map›Paper›PMID 42654954›Full record

ArticleMicroorganisms2026

Algorithm and Software to Type Stx Operons Accurately from Assembled Genomic Sequence.

Arjun Balmiki Prasad, Stephanie Abromaitis, Vyacheslav Brover, Michael Feldgarden, Katrine Grimstrup Joensen, Curtis James Kapsak, Rebecca L Lindsey, Linlin Li, Valeria Michelacci, Susanne Schjørring and 2 more

Abstract read
In one paragraph

Article in Microorganisms, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Arjun Balmiki PrasadNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA.
Stephanie AbromaitisMicrobial Diseases Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, CA 94804, USA.
Vyacheslav BroverNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA.ORCID 0000-0002-4980-7150
Michael FeldgardenNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA.
Katrine Grimstrup JoensenDepartment of Bacteria, Parasites & Fungi, Statens Serum Institute, 2300 Copenhagen, Denmark.ORCID 0000-0002-0350-105X
Curtis James KapsakTheiagen Genomics, Highlands Ranch, CO 80129, USA.ORCID 0000-0002-8735-1190
Rebecca L LindseyEnteric Diseases Laboratory Branch, U.S. Centers for Disease Control and Prevention, Atlanta, GA 30329, USA.ORCID 0000-0002-2149-7971
Linlin LiMicrobial Diseases Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, CA 94804, USA.
Valeria MichelacciEuropean Reference Laboratory for E. coli Including Verotoxigenic E. coli (VTEC), Istituto Superiore di Sanità, 00161 Rome, Italy.
Susanne SchjørringDepartment of Bacteria, Parasites & Fungi, Statens Serum Institute, 2300 Copenhagen, Denmark.
Flemming ScheutzThe International Escherichia and Klebsiella Centre, Section of Foodborne Infections, Department of Bacteria, Parasites and Fungi, Statens Serum Institut, 2300 Copenhagen, Denmark.ORCID 0000-0002-3931-4846
William KlimkeNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA.

Funding

CDC Advanced Molecular Detection (AMD) programHuman Foods Program, U.S. Food and Drug AdministrationJG CDC HHS CK19-1904NU50CK000539National Center for Biotechnology InformationNational Institute of Allergy and Infectious DiseasesNCEZID CDC HHS U01 CK000539
6 · The paper itself

Abstract

Shiga toxins in Shiga toxin-producing

Indexed as

AMRFinderPlushemolytic uremic syndrome (HUS)pathogen surveillanceShiga toxin-producing Escherichia coli (STEC)Shiga toxin (Stx)Stx typing algorithmwhole genome sequencing (WGS)

Identifiers

PMID42654954
PMCPMC13515842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.