Evidence map›Paper›PMID 42649389›Full record

ArticleNature genetics2026

Developmental and MAPK-responsive transcription factors regulate distinct malignant cell states and associated genetic dependencies in pancreatic cancer.

Pasquale Laise, Mikko Turunen, Alvaro Curiel-Garcia, Lorenzo Tomassoni, H Carlo Maurer, Ela Elyada, Bernhard Schmierer, Jeremy Worley, Jordan Kesner, Xiangtian Tan and 17 more

Abstract read
In one paragraph

Article in Nature genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Regulatory network analysis ofbioRxiv : the preprint server for biology · 2024
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Pasquale Laise *Department of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1469-4704
Mikko Turunen *Department of Systems Biology, Columbia University, New York, NY, USA.
Alvaro Curiel-Garcia *Division of Digestive and Liver Diseases, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-6249-3267
Lorenzo TomassoniDepartment of Systems Biology, Columbia University, New York, NY, USA.
H Carlo MaurerKlinikum rechts der Isar, II. Medizinische Klinik, Technische Universität München, Munich, Germany.
Ela ElyadaCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Bernhard SchmiererSciLifeLab and Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Biomedicum Solnavägen 9, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-9082-7022
Jeremy WorleyDepartment of Systems Biology, Columbia University, New York, NY, USA.
Jordan KesnerDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1330-1980
Xiangtian TanDepartment of Systems Biology, Columbia University, New York, NY, USA.
Ester Calvo FernandezDepartment of Systems Biology, Columbia University, New York, NY, USA.
Yuanqing XueDepartment of Systems Biology, Columbia University, New York, NY, USA.
Yining ChenDepartment of Systems Biology, Columbia University, New York, NY, USA.
Kelly WongDepartment of Systems Biology, Columbia University, New York, NY, USA.
Urszula N WaskoDivision of Digestive and Liver Diseases, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Somnath TagoreDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-9603-1263
Alexander L E WangDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-2829-7398
Sabrina GePrincess Margaret Cancer Centre, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-0242-753X
Alina C IugaDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Aaron T GriffinDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-8027-0822
Winston WongDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Gulam A ManjiDepartment of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.ORCID http://orcid.org/0009-0000-7459-6036
Mariano J AlvarezDepartment of Systems Biology, Columbia University, New York, NY, USA.
Faiyaz NottaPrincess Margaret Cancer Centre, Toronto, Ontario, Canada.
David A TuvesonCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID http://orcid.org/0000-0002-8017-2712
Kenneth P OliveDivision of Digestive and Liver Diseases, Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA. kenolive@columbia.edu.ORCID http://orcid.org/0000-0002-3392-8994
Andrea CalifanoDepartment of Systems Biology, Columbia University, New York, NY, USA. ac2248@cumc.columbia.edu.ORCID http://orcid.org/0000-0003-4742-3679

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
RESEARCH TRAININGP30DK026687 · NIDDK · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI Anthony W Ferrante, DYMPNA GALLAGHER · 1986 to 2026
$33.0M
Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
Systematic pharmacological targeting of the core mechanisms responsible for maintaining cancer cell stateU54CA209997 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA, HONIG, BARRY H · 2016 to 2021
$10.9M
Studying the evolution of drug resistance in prostate cancer at the single cell levelU54CA274506 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DIANA MURRAY · 2023 to 2026
$9.1M
The Organoid and Cell Culture CoreP30DK132710 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Robert F. Schwabe · 2022 to 2026
$7.2M
Elucidation and targeting of paracrine cascades in PDACU01CA274312 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Gulam Abbas Manji, Kenneth P. Olive · 2022 to 2026
$4.9M
High Performance Computing Cluster for Biomedical ResearchS10OD032433 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2023 to 2023
$2.0M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCI NIH HHS P30 CA013696NCI NIH HHS R35 CA197745NCI NIH HHS U01 CA274312NCI NIH HHS U54 CA209997NCI NIH HHS U54 CA274506NIDDK NIH HHS P30 DK026687NIDDK NIH HHS P30 DK132710NIH HHS S10 OD012351NIH HHS S10 OD021764NIH HHS S10 OD032433
6 · The paper itself

Abstract

There is broad consensus that the malignant epithelial cells of human pancreatic ductal adenocarcinoma (PDA) comprise multiple, molecularly distinct states. Yet precise characterization of how these are regulated-including their mechanistic determinants, dependencies, plasticity and functional properties-remains elusive. Single-cell master regulator (MR) analysis of multiple PDA cohorts identified malignant cells in three co-existing, molecularly distinct developmental lineage states, with distinct histopathological morphologies and spatial architecture. These include a poorly differentiated lineage driven by epithelial-mesenchymal-transition-related MRs and two well-differentiated states driven by gastrointestinal epithelial development and pancreatic development MRs, respectively. Furthermore, each state comprises two epigenetically distinct substates with low versus high MAPK signaling activity. Barcode-based lineage tracing confirmed both spontaneous and treatment-dependent cross-state plasticity. Furthermore, loss-of-function studies confirmed state-specific MR essentiality, while their ectopic expression effectively reprogrammed cell state, in vitro and in vivo, thus providing a mechanism-based foundation for PDA heterogeneity and a roadmap for pharmacological targeting.

Indexed as

Carcinoma, Pancreatic DuctalMitogen-Activated Protein KinasesAnimalsCell LineageEpigenesis, GeneticEpithelial-Mesenchymal TransitionHeterograftsHumansImmunocompromised HostMiceMutationNeoplasm TransplantationSingle-Cell Gene Expression AnalysisTranscription, GeneticMitogen-Activated Protein Kinases

Identifiers

PMID42649389
PMCPMC13553295

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.