Evidence map›Paper›PMID 42649223›Full record

ArticleScientific data2026

Haplotype-resolved chromosomal-level genome assembly of Mastigias papua.

Bingbing Li, Xiuxiu Wang, Shirong Lv, Xuelu Yu, Wenqi Zhu, Xue Wang, Yingying Feng, Nanmei Liu, Ying He, Jishun Yang

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Bingbing Li *Naval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Xiuxiu Wang *Naval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Shirong Lv *Naval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Xuelu YuNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Wenqi ZhuNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Xue WangNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Yingying FengNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China.
Nanmei LiuNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China. liunanmei0126@smmu.edu.cn.
Ying HeNaval Medical Center of PLA, Naval Medical University, Shanghai, 200052, China. yinghe_hys@163.com.
Jishun YangDepartment of Pharmacy, Changzheng Hospital, Naval Medical University, Shanghai, 200003, China. jasunyang@foxmail.com.

Funding

Military Project CHJ24C025, CB2023A03the Shanghai Natural Science Foundation General Project 25ZR1401400
6 · The paper itself

Abstract

Mastigias papua is a representative species of the Scyphozoa class. Its outer umbrella surface is covered with white spots and it is mainly distributed in the Pacific and Indian Ocean. In this study, we generated a haplotype-resolved, chromosome-scale genome assembly for M. papua using PacBio HiFi long reads and Hi-C technology. The resulting assembly contains two haplotypes (Hap A and Hap B) with sizes of 379.81 MB (contig N50 = 13.03 Mb) and 344.57 MB (contig N50 = 14.24 Mb), and both anchored to 21 chromosomes with anchor ratio of 94.35% and 97.59%, respectively. The sequencing depth, mapping coverage, contig continuity, and BUSCO assessment collectively indicate a high-quality haplotype-resolved genome assembly. This high-quality genome assembly provides a valuable resource for further genetic studies and genetic improvement of the group of M. papua. BUSCO assessment indicated that the completeness of the two haploid genomes was 93.3% (HapA) and 92.2% (HapB), respectively, demonstrating excellent assembly quality. Annotation results identified 27,401 protein-coding genes and 182.83 Mb of repetitive sequences (accounting for 48.14% of the genome) in HapA, while HapB contained 23,905 protein-coding genes and 158.00 Mb of repetitive sequences (representing 45.85% of the genome). Functional annotation revealed that over 88% of the genes could be matched to public databases such as NR, KEGG, and GO. These phased genome assemblies and gene annotations provide a quality-controlled genomic resource for Mastigias papua.

Indexed as

GenomeHaplotypesScyphozoaAnimalsChromosomes

Identifiers

PMID42649223
PMCPMC13518791

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.