Evidence map›Paper›PMID 42649135›Full record

ArticleNature communications2026

Octameric dGTPase assemblies mediate broad anti-phage defense.

Miao Shi, Peipei Li, Quanjin Li, Chao Ning, Sen Yin, Yina Gao, Yong Wang, Jingyu Li, Zhaolong Li, Songqing Liu and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Miao Shi *Medical Science and Technology Innovation Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China. mshi@email.sdfmu.edu.cn.ORCID http://orcid.org/0009-0000-9845-0285
Peipei Li *National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Quanjin Li *National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Chao Ning *National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Sen YinKey Laboratory of Molecular Medicine and Biotherapy, Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing, China.
Yina GaoNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Yong WangNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-3578-7742
Jingyu LiNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Zhaolong LiNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Songqing LiuNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Dong LiNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Changwei WeiAnesthesia & Operation Center, Beijing Chao-Yang Hospital, Capital Medical University, Beijing, China. changwei.wei@ccmu.edu.cn.ORCID http://orcid.org/0000-0001-5652-600X
Ang GaoMedical Science and Technology Innovation Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, China. ang.gao@bit.edu.cn.ORCID http://orcid.org/0000-0001-8834-9781

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32171219
6 · The paper itself

Abstract

Deoxyguanosine triphosphatases (dGTPases) are nucleotide-depleting enzymes known to play a role in antiviral defense. While their enzymatic mechanism is established, the structural and functional diversity of dGTPases remains poorly understood. Here, we report a systematic analysis of dGTPase homologs across bacteria, archaea, and eukaryotes, revealing their widespread distribution and association with diverse immune-related domains. Through integrative bioinformatics and structural mining, we identify a class of bacterial dGTPases that assemble into stable octameric and higher-order oligomeric structures. Using cryo-electron microscopy, we resolve the octameric and 16-mer assemblies of a representative Vibrio dGTPase (Vdg) and further captured filamentous forms. Functional assays demonstrate that octamer formation is essential and sufficient for antiviral activity, while higher-order assemblies are dispensable. We also identify dAMP as an allosteric regulator, underscoring the functional versatility of dGTPases. Our findings provide insights into the modular architecture, oligomerization-driven activation, and immune function of bacterial dGTPases, and broaden our understanding of nucleotide depletion-based antiviral strategies.

Indexed as

Bacterial ProteinsBacteriophagesCryoelectron MicroscopyModels, MolecularProtein MultimerizationVibrioBacterial Proteins

Identifiers

PMID42649135
PMCPMC13519002

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.