Evidence map›Paper›PMID 42633195›Full record

ArticleBioinformatics advances2026

Machine-learning-based analysis of host-depleted

Seunghyun Lim, Ezekiel Ahn, Dapeng Zhang, Lyndel W Meinhardt, Sunchung Park

Abstract read
In one paragraph

Article in Bioinformatics advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Seunghyun LimSustainable Perennial Crops Laboratory, United States Department of Agriculture, Agriculture Research Service, Beltsville, MD, United States.ORCID https://orcid.org/0000-0003-3023-4863
Ezekiel AhnSustainable Perennial Crops Laboratory, United States Department of Agriculture, Agriculture Research Service, Beltsville, MD, United States.ORCID https://orcid.org/0000-0003-4447-4104
Dapeng ZhangSustainable Perennial Crops Laboratory, United States Department of Agriculture, Agriculture Research Service, Beltsville, MD, United States.ORCID https://orcid.org/0000-0001-8212-6114
Lyndel W MeinhardtSustainable Perennial Crops Laboratory, United States Department of Agriculture, Agriculture Research Service, Beltsville, MD, United States.ORCID https://orcid.org/0000-0001-8299-2629
Sunchung ParkSustainable Perennial Crops Laboratory, United States Department of Agriculture, Agriculture Research Service, Beltsville, MD, United States.ORCID https://orcid.org/0000-0002-7398-9476

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Motivation: Early detection of plant pathogens is essential for timely disease management, but diagnosis at low infection levels remains difficult because pathogen-derived sequences are often masked by abundant host DNA. Results: We evaluated a Availability and implementation: Code is available at GitHub (https://github.com/TropicalBreeding/coffee-pathogen-kmer-ml).

Identifiers

PMID42633195
PMCPMC13499227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.