Evidence map›Paper›PMID 42631186›Full record

ArticleACS measurement science au2026

FERMO: A Dashboard for Biochemometric Prioritization of Molecular Features from Mass Spectral Data.

Mitja M Zdouc, Hannah E Augustijn, Nataliia V Machushynets, Lina M Bayona, Sylvia Soldatou, Niek F de Jonge, Sarah Casu, Marcel Jaspars, Gilles P van Wezel, Marnix H Medema and 1 more

Abstract read
In one paragraph

Article in ACS measurement science au, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mitja M ZdoucBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.ORCID https://orcid.org/0000-0001-6534-6609
Hannah E AugustijnBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.
Nataliia V MachushynetsInstitute of Biology, Leiden University, Sylviusweg 72, Leiden 2333BE, The Netherlands.ORCID https://orcid.org/0000-0002-8530-1966
Lina M BayonaInstitute of Biology, Leiden University, Sylviusweg 72, Leiden 2333BE, The Netherlands.
Sylvia SoldatouMarine Biodiscovery Centre, Department of Chemistry, University of Aberdeen, Scotland, Old Aberdeen AB24 3DT, United Kingdom.
Niek F de JongeBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.ORCID https://orcid.org/0000-0002-3054-6210
Sarah CasuBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.
Marcel JasparsMarine Biodiscovery Centre, Department of Chemistry, University of Aberdeen, Scotland, Old Aberdeen AB24 3DT, United Kingdom.
Gilles P van WezelInstitute of Biology, Leiden University, Sylviusweg 72, Leiden 2333BE, The Netherlands.ORCID https://orcid.org/0000-0003-0341-1561
Marnix H MedemaBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.ORCID https://orcid.org/0000-0002-2191-2821
Justin J J van der HooftBioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.ORCID https://orcid.org/0000-0002-9340-5511

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many natural products can selectively modulate biological processes, making them prime candidates for drug discovery. However, the complexity of biological samples makes clear attribution of activity to molecules challenging, thereby hampering hypothesis-driven prioritization, with liquid chromatography-tandem mass spectrometry routinely detecting hundreds of molecules per sample. Existing biochemometric tools typically focus on facilitating data-driven exploration to support manual interpretation, rather than more objective, data-driven prioritization and hypothesis generation. Here, we introduce FERMO, a free online dashboard interface for biochemometrics-based prioritization of molecular features and samples. FERMO accepts qualitative and quantitative bioactivity assay data and further integrates group metadata and results from genome mining. FERMO performs automated data processing, organization, and annotation, supporting prioritization with the calculation of custom scores. FERMO supports both exploratory and targeted analysis through efficient interactive visualization, reproducible prioritization, and data filtering. We demonstrate FERMO's utility in benchmarking studies prioritizing bioactive natural products from complex biological matrices. FERMO is freely available at https://fermo.bioinformatics.nl/.

Indexed as

AntibioticsComputational MetabolomicsData IntegrationMass SpectrometryNatural ProductsSecondary/Specialized Metabolites

Identifiers

PMID42631186
PMCPMC13495721

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.