Evidence map›Paper›PMID 42629952›Full record

ReviewImmunological reviews2026

The Role of the T Cell Receptor Sequence in Shaping T Cell Functional Fate.

Sreekar Mantena, Soumya Raychaudhuri

Abstract readReview
In one paragraph

Review in Immunological reviews, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sreekar MantenaCenter for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.ORCID https://orcid.org/0000-0002-8834-1461
Soumya RaychaudhuriCenter for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.ORCID https://orcid.org/0000-0002-1901-8265

Funding

Role of fibroblastic stromal cells and notch signaling in tissue inflammation in RA and SLEP01AI148102 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI Betty Diamond · 2021 to 2026
$17.3M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
Discovery and Functional Impact of Common and Rare Variants in RAR01AR063759 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Soumya Raychaudhuri · 2013 to 2026
$5.4M
Predicting the impact of genetic variants, genes and pathways on human DiseaseU01HG012009 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ALKES L PRICE, Soumya Raychaudhuri · 2021 to 2026
$4.2M
Integrative modelling of single-cell data to elucidate the genetic architecture of complex diseaseR56HG013083 · NHGRI · DANA-FARBER CANCER INST · PI GUSEV, ALEXANDER, PRICE, ALKES L · 2023 to 2023
$400k
NHGRI NIH HHS R56 HG013083NHGRI NIH HHS U01 HG012009NIAID NIH HHS P01 AI148102NIAMS NIH HHS R01 AR063759NIGMS NIH HHS T32 GM144273NIH HHS P01AI148102NIH HHS R01AR063759NIH HHS R56HG013083NIH HHS T32GM144273NIH HHS U01HG012009
6 · The paper itself

Abstract

The T cell receptor (TCR) has long been studied through the lens of antigen recognition, with decades of work characterizing how the TCR sequence specifies the peptide-MHC ligands a T cell can engage. Yet a growing body of evidence indicates that the TCR sequence carries another dimension of functional information: it biases the transcriptional fate a T cell is likely to adopt. In this review, we synthesize the evidence that TCR sequence features shape T cell differentiation during both thymic development and peripheral responses. We provide an overview of the landscape of T cell fates and the TCR structure, describe advancements in technologies to profile T cell phenotype and TCR sequence, and outline computational strategies for modeling the relationship between them. We specifically examine four reproducible axes of covariation between TCR sequence and T cell fate, including innate-like lineages, regulatory T cells, CD4 versus CD8 commitment, and peripheral memory formation. Understanding the probabilistic fate biases encoded by the TCR may advance our ability to interpret repertoires in health and disease and engineer next-generation cellular therapies.

Indexed as

Receptors, Antigen, T-CellT-LymphocytesT-Lymphocyte SubsetsAnimalsCell DifferentiationCell LineageHumansImmunologic MemoryLymphocyte ActivationThymus GlandReceptors, Antigen, T-Cell

Identifiers

PMID42629952
PMCPMC13498775

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.