Evidence map›Paper›PMID 42626304›Full record

ArticleWorld journal of clinical pediatrics2026

Microbial and functional shifts between flare and remission in a single-center cohort of children with inflammatory bowel disease.

James Guoxian Huang, Carina Jing-Xuan Tay, Marion Margaret Aw, Yung-Seng Lee, Delicia Shu-Qin Ooi

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Article in World journal of clinical pediatrics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

James Guoxian HuangDepartment of Paediatrics, Khoo Teck Puat - National University Children's Medical Institute, National University Health System, Singapore 119228, Singapore.
Carina Jing-Xuan TayPaediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.
Marion Margaret AwDepartment of Paediatrics, Khoo Teck Puat - National University Children's Medical Institute, National University Health System, Singapore 119228, Singapore.
Yung-Seng LeeDepartment of Paediatrics, Khoo Teck Puat - National University Children's Medical Institute, National University Health System, Singapore 119228, Singapore.
Delicia Shu-Qin OoiPaediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGut microbial dysbiosis is central to the pathogenesis of inflammatory bowel disease (IBD). While gut microbiome differences between patients with and without IBD are well established, microbiome changes associated with disease activity and remission remain limited, particularly in paediatric populations.

aimTo examine intra-individual taxonomic and functional gut microbiome changes during transition from active flare to remission under maintenance immunosuppression in a pilot single-center Singapore cohort of children with IBD.

methodsPaired stool samples and clinical data were collected from seven patients with paediatric IBD [5 Crohn's disease (CD), 2 ulcerative colitis; ≤ 18 years] during active disease/flare (visit 1; Pediatric CD Activity Index/Pediatric Ulcerative Colitis Activity Index ≥ 10) and subsequent clinical remission (visit 2; Pediatric CD Activity Index/Pediatric Ulcerative Colitis Activity Index < 10). Samples underwent shotgun metagenomic sequencing for high-resolution taxonomic profiling and functional annotation of Kyoto Encyclopaedia of Genes and Genomes pathways.

resultsGut microbial diversity was reduced during flare compared to remission, with Actinobacteria abundance significantly higher in remission. Two distinct microbial clusters differentiated flare and remission states: The remission cluster was enriched with

conclusionThe transition from flare to remission in Singaporean children with IBD is characterized by functional remodeling of the gut microbiome, which may contribute to recovery processes related to intestinal barrier integrity, cellular maintenance, and tissue repair. Targeted modulation of the gut microbiome may help sustain remission in paediatric IBD.

Indexed as

Functional shiftGut microbiomeInflammatory bowel diseaseMetagenomicMicrobial shiftPediatrics

Identifiers

PMID42626304
PMCPMC13491188

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