Evidence map›Paper›PMID 42620177›Full record

ArticleResearch square2026

Fluctuating environment causes neoplastic transition and epithelial-mesenchymal plasticity in human cells.

Erez Persi, Rafael Canevarolo, Praneeth Reddy Sudalagunta, Liping Xu, Khadijeh Karbalaei, Gulden Olgun, Yuri Wolf, Sridhar Hannenhalli, Eugene Koonin, Ariosto Siqueira Silva

Abstract readPreprint
In one paragraph

Article in Research square, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Erez PersiNational Institutes of Health.ORCID 0009-0001-3228-5552
Rafael CanevaroloH. Lee Moffitt Cancer Center & Research Institute.ORCID 0000-0002-8722-8512
Praneeth Reddy SudalaguntaH. Lee Moffitt Cancer Center & Research Institute.ORCID 0000-0003-1283-9332
Liping XuDepartment of Metabolism and Physiology, H. Lee Moffitt Cancer Center & Research Institute.
Khadijeh KarbalaeiStony Brook University.
Gulden OlgunDepartment of Computer Engineering, Hacettepe University.ORCID 0000-0002-4467-1610
Yuri WolfNational Institutes of Health.ORCID 0000-0002-0247-8708
Sridhar HannenhalliNational Institutes of Health.ORCID 0000-0001-9603-7569
Eugene KooninNational Institutes of Health.ORCID 0000-0003-3943-8299
Ariosto Siqueira SilvaH Lee Moffitt Cancer Center and Research Institute.ORCID 0000-0003-3237-9986

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI John L. Cleveland · 1998 to 2026
$93.5M
Ecology and Evolution of Breast CarcinogenesisU01CA261841 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI DAMAGHI, MEHDI, SIQUEIRA SILVA, ARIOSTO S · 2021 to 2025
$3.0M
NCI NIH HHS P30 CA076292NCI NIH HHS U01 CA261841
6 · The paper itself

Abstract

How environmental selective pressures contribute to the emergence of a neoplastic tumorigenic state, remains incompletely understood. Here we show that the immortalized non-tumorigenic breast epithelial cell line (MCF10A) develops neoplastic clones under fluctuating conditions in-vitro that mimic the harsh tumor microenvironment. Long-term evolutionary experiments and genomic landscape analyses of the clones identified ROS as the dominant clonal mutational signature that facilitates the acquisition of oncogenic driver mutations and the onset of the Warburg phenotype. Single cell multi-omics and brightfield microscopy further elucidate that each clone adopts two plastic phenotypic states, epithelial-like and mesenchymal-like, the transition between which is epigenetically mediated by de novo expression of Grainyhead-like Transcription Factor 2 (

Indexed as

Breast CancerEpithelial-Mesenchymal Plasticity (EMP)Genetic and Phenotypic HeterogeneitySelection (dN/dS)Single Cell Multi-OmicsTumor EvolutionTumorigenesisWarburg Phenotype

Identifiers

PMID42620177
PMCPMC13484392

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.