Evidence map›Paper›PMID 42616902›Full record

ArticleScience advances2026

Central T cell tolerance from sparse peptide sampling.

Hannah V Meyer, Sanjoy Dasgupta, Amitava Banerjee, Yong Lin, Rishvanth K Prabakar, Sarah R Chapin, Carl Kingsford, Saket Navlakha

Abstract read
In one paragraph

Article in Science advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hannah V MeyerSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0003-4564-0899
Sanjoy DasguptaComputer Science and Engineering Department, University of California San Diego, La Jolla, CA USA.ORCID 0000-0002-5960-5157
Amitava BanerjeeSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0001-9241-3555
Yong LinSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-2839-5740
Rishvanth K PrabakarSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Sarah R ChapinSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-7775-3380
Carl KingsfordRay and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA USA.ORCID 0000-0002-0118-5516
Saket NavlakhaSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-5505-9718

Funding

Dissecting dynamic genetic effects from thymus development to immune-mediated diseaseR01AI167862 · NIAID · COLD SPRING HARBOR LABORATORY · PI Hannah Verena Meyer · 2022 to 2026
$2.5M
Graphical Processing Units and a Large-Memory Compute Node for Applications in Genomics, Neuroscience, and Structural BiologyS10OD028632 · OD · COLD SPRING HARBOR LABORATORY · PI SIEPEL, ADAM CHARLES · 2020 to 2020
$437k
NIAID NIH HHS R01 AI167862NIH HHS S10 OD028632
6 · The paper itself

Abstract

Negative selection in the thymus limits autoimmunity by eliminating T cells that react strongly to self. Individual T cells, however, are only exposed to a small fraction of all self-peptides during their "training" in the thymus, and how tolerance is generalized to the remaining "test" self-peptides across peripheral tissues in the body remains an open question. We show that this can be achieved because the immune system satisfies two conditions necessary for generalization in machine learning settings. Consequently, sparse, random sampling of only 10% of self-peptides in the thymus is sufficient to avoid reactivity to 90% of peripheral self. We support this result and validate predictions from our model with diverse experimental data. Overall, we provide a plausible answer to a long-standing question underlying adaptive immunity, and we highlight how generalization, a fundamental challenge faced by nearly every learning algorithm, is tackled by the immune system.

Indexed as

Central TolerancePeptidesT-LymphocytesAdaptive ImmunityAlgorithmsAnimalsHumansImmunoinformaticsMachine LearningModels, ImmunologicalThymus GlandPeptides

Identifiers

PMID42616902
PMCPMC13488932

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.