Evidence map›Paper›PMID 42605531›Full record

ArticlePlant physiology2026

The yellow-in-the-dark chIL Chlamydomonas mutant as a model for time-resolved chloroplast biogenesis and retrograde signaling.

M Águila Ruiz-Sola, Mariano A De Silvio, Mario Becerra-Tinoco, Andrea M Quintero-Moreno, Beatrice Pacenza, José L Crespo, Elena Monte

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Focus on algae and aquatic plants.Plant physiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

M Águila Ruiz-SolaCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona 08193, Spain.ORCID 0000-0002-2281-6700
Mariano A De SilvioCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona 08193, Spain.ORCID 0009-0005-6455-8075
Mario Becerra-TinocoInstituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Av. Américo Vespucio 49, Sevilla 41092, Spain.ORCID 0009-0006-6060-5919
Andrea M Quintero-MorenoInstituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Av. Américo Vespucio 49, Sevilla 41092, Spain.ORCID 0009-0005-6254-3187
Beatrice PacenzaCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona 08193, Spain.ORCID 0009-0009-7738-5002
José L CrespoInstituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Av. Américo Vespucio 49, Sevilla 41092, Spain.ORCID 0000-0003-3514-1025
Elena MonteCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona 08193, Spain.ORCID 0000-0002-7340-9355

Funding

AGAUR-FI ajuts 2020 FI_B_00343Beatriu de Pinós 2018 BP 0032CERCA Programme/Generalitat de Catalunya 2017SGR-718CERCA Programme/Generalitat de Catalunya 2021SGR-792Department of Research and Universities of the Generalitat of CataloniaERDF A way of making EuropeEuropean Social Plus FundEuropean Union CEX2019-000902-SJuan de la Cierva Incorporación IJC2018-035773MICIUMinisterio de Ciencia, Innovación y Universidades PID2021-123500NB-I00Ministerio de Ciencia, Innovación y Universidades TED2021-130912B-I00Spanish Ministry of Economy and CompetitivenessUniversity of Sevilla
6 · The paper itself

Abstract

Understanding chloroplast biogenesis is key given the importance of photosynthesis and chloroplast metabolism. Chloroplast assembly has been extensively studied in angiosperms, where the main hallmarks have been established, including the need for nuclear and plastid genome coordination through anterograde and retrograde signals. However, recent works in other photosynthetic lineages have revealed both divergent and conserved regulators. These differences likely represent adaptive strategies that emerged during the evolution of the green lineage and highlight the need for evolutionary studies to fully elucidate the mechanisms controlling chloroplast biogenesis, a light-promoted process. Here, we characterize the yellow-in-the-dark chIL mutant of Chlamydomonas reinhardtii, which carries a mutation in the CHLL subunit of the dark-operative POR enzyme. Dark-adapted chIL cells cannot synthesize chlorophylls and display a de-differentiated chloroplast, and our results show that upon exposure to light, chloroplast biogenesis is initiated very rapidly based on starch reserves. We demonstrate that accumulation of pigments, photosynthesis-related proteins, and functional chloroplast activity is detected within 1 to 3 h of illumination. Additionally, we show that lincomycin, an inhibitor of plastid translation, specifically affects chloroplast physiology, blocks light-induced chloroplast biogenesis and cell growth, and triggers retrograde signaling, establishing lincomycin as a valuable tool for investigating chloroplast physiology and plastid-to-nucleus communication in Chlamydomonas. Together, this study introduces the chIL mutant as a powerful model system to dissect light-induced, time-resolved chloroplast biogenesis, as well as the responses and signaling triggered by lincomycin. By promoting broader adoption of this model, we aim to help inform strategies to enhance photosynthesis and stress tolerance and optimize bioproduct production.

Indexed as

Chlamydomonas reinhardtiiChloroplastsSignal TransductionChlorophyllDarknessLightLincomycinMutationPhotosynthesisChlorophyllLincomycin

Identifiers

PMID42605531
PMCPMC13521271

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.