Evidence map›Paper›PMID 42604909›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

HessFit: Deriving Molecule-Specific Force Fields from Quantum Mechanical Hessians.

Emanuele Falbo, Antonio Lavecchia

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Emanuele FalboDipartimento di Farmacia, "Drug Discovery Laboratory", Università degli Studi di Napoli "Federico II", Napoli, Italy.
Antonio LavecchiaDipartimento di Farmacia, "Drug Discovery Laboratory", Università degli Studi di Napoli "Federico II", Napoli, Italy. antonio.lavecchia@unina.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of accurate and transferable molecular mechanics force fields (FMs) is crucial for reliable molecular dynamics (MD) simulations. Conventional force fields such as AMBER, CHARMM, OPLS, and GROMOS prioritize transferability at the expense of maximal accuracy, which can limit their performance when modeling novel chemical moieties or metal coordination environments. To address this issue, we present HessFit, an open-source Python toolkit that refines classical force fields using quantum mechanical (QM) information. HessFit derives molecule-specific bond parameters and atomic charges directly from QM Hessians and potential energy surfaces, combining analytical extraction and fitting procedures to obtain accurate bond, angle, and torsion constants. Benchmarks on several small molecules show better reproduction of vibrational frequencies, geometries, and thermodynamic properties compared to GAFF2 and OPLS. Applications to ligand-protein complexes further demonstrate HessFit's ability to model coordination environments that are typically challenging for transferable force fields. By integrating QM-level precision with classical computational efficiency, HessFit advances automated, data-driven force field parameterization, enhancing both accuracy and reproducibility across complex molecular systems.

Indexed as

Molecular Dynamics SimulationQuantum MechanicsQuantum TheorySoftwareLigandsProteinsThermodynamicsLigandsProteinsForce field parameterizationLigand–protein modelingMolecular HessianPython toolkitQM/MM validationTorsional fitting

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.