Evidence map›Paper›PMID 42595979›Full record

ArticleBMC genomic data2026

Transcriptome datasets of four freshwater bacterial isolates grown under iron-replete and iron-limited conditions.

Gi Uk Hong, Ye Jin Gwak, Yujin Hwang, Ji Young Jung, Hyo Jung Lee

Abstract read
In one paragraph

Article in BMC genomic data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Gi Uk HongDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.
Ye Jin GwakDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.
Yujin HwangBiological Resources Research Department, Nakdonggang National Institute of Biological Resources (NNIBR), Sangju, Republic of Korea.
Ji Young JungBiological Resources Research Department, Nakdonggang National Institute of Biological Resources (NNIBR), Sangju, Republic of Korea. jyjung@nnibr.re.kr.
Hyo Jung LeeDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea. hjlee@kunsan.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveBacteria respond to iron limitation by activating distinct uptake and siderophore-biosynthesis pathways, and comparative transcriptomics under varying iron availability provide insights into these diverse adaptive mechanisms. Here we describe RNA-seq datasets generated from four freshwater bacterial isolates-Pseudomonas sp. FBCC-B13192, Herbaspirillum sp. FBCC-B12834, Pantoea sp. FBCC-B5559, and Micrococcus sp. FBCC-B5738-cultured under FeCl DATA DESCRIPTION: The dataset comprises eight paired-end libraries (16 FASTQ files) generated in 2024 and 2025, totaling 349,853,404 processed reads. Raw sequence data are openly available in the NCBI Sequence Read Archive under SRA study accession SRP695241 (BioProject PRJNA1456794; SRR38280322-SRR38280329; BioSamples SAMN57450602-SAMN57450609). Read alignment rates were 78.59% and 71.98% for Pseudomonas sp. FBCC-B13192, 92.30% and 89.11% for Herbaspirillum sp. B12834, 89.29% and 89.23% for Pantoea sp. FBCC-B5559, and 34.75% and 21.39% for Micrococcus sp. FBCC-B5738 under FeCl

Indexed as

BacteriaFresh WaterIronTranscriptomeSiderophoresIronSiderophoresFreshwater bacteriaIron limitationSiderophoreTranscriptome

Identifiers

PMID42595979
PMCPMC13474768

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.