Evidence map›Paper›PMID 42594003›Full record

ArticleMolecular informatics2026

MolScope: A Transparent Representation-Aware Workflow Toolkit for Reproducible Medicinal-Chemistry Triage.

Khaled M Elokely

Abstract read
In one paragraph

Article in Molecular informatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Khaled M ElokelyDivision of Pharmaceutical Sciences, School of Pharmacy, University of Wyoming, Laramie, Wyoming, USA.ORCID https://orcid.org/0000-0002-2394-021X

Funding

Wyoming INBRE Phase 4- Equipment Supplement for x-ray diffractometer for Center for Advanced Scientific InstrumentationP20GM103432 · NIGMS · UNIVERSITY OF WYOMING · PI Nicolas A. Blouin · 2012 to 2026
$56.8M
Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of HealthNIGMS NIH HHS P20 GM103432
6 · The paper itself

Abstract

Medicinal-chemistry review is often built from disconnected notebooks, spreadsheets, and slide decks that hide structure-normalization choices and blur the boundary between measured observations and heuristic prioritization. MolScope is an open-source Python workflow toolkit that converts molecular structure collections and optional assay joins into a canonical chemistry table, category-aware summaries, and decision-ready report and picklist artifacts. The workflow makes representation policy explicit, preserves evidence provenance, and packages outputs as portable HTML, Markdown, and CSV bundles. Using frozen example datasets, we show reproducible end-to-end execution, auditable handling of salts, tautomers, stereo ambiguity, charge state, and one bounded round-review example for comparative campaign support.

Indexed as

Chemistry, PharmaceuticalSoftwareWorkflowReproducibility of Resultscheminformaticsdecision supportmedicinal chemistrymolecular representationworkflow reproducibility

Identifiers

PMID42594003
PMCPMC13472379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.