Evidence map›Paper›PMID 42591089›Full record

ReviewFrontiers in neurology

Validation of open-source deep learning segmentation tools for automated glioma volumetry: a narrative review of Dice scores, workflow efficiency, and clinical RANO 2.0 implementation.

Marek Slachta, Matej Halaj, Klara Balazova, Ondrej Kalita, Lumir Hrabalek, Eva Cechakova, Pavla Kudlova

Abstract readReview
In one paragraph

Review in Frontiers in neurology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marek SlachtaDepartment of Neurosurgery, University Hospital Olomouc and Faculty of Medicine, Palacký University Olomouc, Olomouc, Czechia.
Matej HalajDepartment of Neurosurgery, University Hospital Olomouc and Faculty of Medicine, Palacký University Olomouc, Olomouc, Czechia.
Klara BalazovaDepartment of Biomedical Engineering, University Hospital Olomouc, Olomouc, Czechia.
Ondrej KalitaDepartment of Neurosurgery, University Hospital Olomouc and Faculty of Medicine, Palacký University Olomouc, Olomouc, Czechia.
Lumir HrabalekDepartment of Neurosurgery, University Hospital Olomouc and Faculty of Medicine, Palacký University Olomouc, Olomouc, Czechia.
Eva CechakovaDepartment of Radiology, University Hospital Olomouc and Faculty of Medicine, Palacký University Olomouc, Olomouc, Czechia.
Pavla KudlovaDepartment of Health Care Science, Faculty of Humanities, T. Bata University in Zlin, Zlin, Czechia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Segmentation enables extraction of quantitative imaging features to enhance glioma diagnosis by volumetric measurements and treatment response assessment. This narrative review evaluates open-source software for glioma segmentation and alignment with Response Assessment in Neuro-Oncology (RANO 2.0) volumetric criteria. Approach: In this narrative review, we evaluated thirteen open-source tools selected for multimodal MRI sequence support (T1W, T1CE, T2W, FLAIR), performance on public datasets (BraTS Challenge), and applicability to RANO 2.0 volumetry. Assessment included Dice scores, workflow efficiency, advantages, limitations, and clinical translation potential. Results: Tools achieved Dice scores 0.73-0.92 for tumor subregions. Despite high analytical validation, clinical utility is limited: 85% of treatment response studies have bias risk in patient selection per QUADAS-2 appraisal. Critically, as of November 2024, no automated tools have been formally validated specifically against RANO 2.0 criteria, despite their 2023 emphasis on volumetric standardization. Conclusion: Open-source segmentation tools show promise for standardizing glioma volumetry with emerging tools (GlioMODA, AutoRANO) explicitly targeting RANO 2.0-compatible volumetric assessment. Hybrid approaches combining open-source innovation with commercial clinical integration could optimize clinical translation.

Indexed as

brain tumordeep learningglioma segmentationMRIRANO 2.0volumetry

Identifiers

PMID42591089
PMCPMC13461318

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.