Evidence map›Paper›PMID 42583802›Full record

ArticlePlant physiology2026

DNA-binding activity of PIF7 links phytochrome B signaling to plant responses to vegetation proximity.

Marta Diaz-Lopez, Pedro Pastor-Andreu, Wenting Qin, Angela Sanchez-Garcia, Esteban Burbano-Erazo, Laura Valverde, Sandi Paulišić, Manuel Rodriguez-Concepcion, Jordi Moreno-Romero, Jaume F Martinez-Garcia

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Marta Diaz-LopezInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0002-4178-8047
Pedro Pastor-AndreuCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB Bellaterra, Cerdanyola del Vallès, Barcelona 08193, Spain.ORCID 0000-0001-6320-0569
Wenting QinInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0009-0005-7881-3903
Angela Sanchez-GarciaInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0009-0006-8161-5710
Esteban Burbano-ErazoInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0001-5056-9893
Laura ValverdeInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0002-0131-8817
Sandi PaulišićCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB Bellaterra, Cerdanyola del Vallès, Barcelona 08193, Spain.ORCID 0000-0003-4696-5134
Manuel Rodriguez-ConcepcionInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0002-1280-2305
Jordi Moreno-RomeroInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0002-7352-1507
Jaume F Martinez-GarciaInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, Edifici 8E, CPI, Campus UPV, València 46022, Spain.ORCID 0000-0003-1516-0341

Funding

AEI PID2020-115782GB-I00AEI and "ERDF A Way of Making Europe" BIO2017-85316-RAEI and "ERDF/EU" PID2021-128803NB-I00AEI and "ERDF/EU" PID2023-149395NB-I00AEI and "ESF Investing in Your Future"AEI and "European Union NextGeneration EU/PRTR"AEI and "European Union NextGeneration EU/PRTR" PLEC2022-009323AEI (Spanish Agencia Estatal de Investigacion) MCIU/AEI/10.13039/501100011033Center of Excellence Severo Ochoa MCIU/AEI/10.13039/501100011033Chinese Scholarship Council (CSC) fellowship 201806910055Colombia's Colciencias Doctorado Exterior program MINCIENCIAS885/2020European Commission 797473European Commission H2020-MSCA-IF-2017European extGenerationEU/PRTRGeneralitat Valenciana CIPROM/2024/41institutional grant CEX2025-001626-SJuan de la Cierva postdoctoral contract FJC2021-046591-IPRIMA project UToPIQ PCI2021-121941Ramon y Cajal contract RYC2020-028933-ISpanish network EvoDevoSigNet RED2022-134917-T
6 · The paper itself

Abstract

PHYTOCHROME INTERACTING FACTORs (PIFs) are transcription factors that act as central signaling hubs in light-regulated processes. All PIFs contain an active phytochrome B-binding motif and a DNA-binding basic helix-loop-helix domain. In the shade-avoider Arabidopsis thaliana, PIF7 is a major promoter of hypocotyl elongation in response to vegetation proximity, becoming active when released from phytochrome B via its active phytochrome B-binding motif. Here we show that PIF7 promotes seedling elongation in other species, including the shade-avoider tomato and the shade-tolerant Cardamine hirsuta, suggesting that PIF7 has retained some of its key functional domains across diverse plants. Through complementation analyses using PIF7 variants lacking either the active phytochrome B-binding or basic helix-loop-helix domain, we demonstrate that, unlike PIF3, PIF7 versions unable to bind phytochrome B remain active regardless of light conditions, whereas loss of DNA-binding capacity fully disrupts PIF7 function. Our results further suggest that phytochrome B interaction imposes a dual regulatory control over PIF7, modulating both its abundance and its phosphorylation state (ie its ability to bind and regulate target genes).

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA, PlantPhytochrome BSignal TransductionDNA-Binding ProteinsGene Expression Regulation, PlantHypocotylLightProtein BindingSeedlingsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsDNA, PlantPhytochrome BPIF7 protein, Arabidopsis

Identifiers

PMID42583802
PMCPMC13529829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.