Evidence map›Paper›PMID 42569926›Full record

ArticleBioinformatics (Oxford, England)2026

Modeling dual-range atomic interactions with physicochemical principles for molecular force fields.

Honghao Wang, Zunlong Liu, Xiangxiang Zeng, Zhaohui Song, Chen Lin

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Honghao WangInstitute of Artificial Intelligence, Xiamen University, Xiamen, Fujian 361102, China.
Zunlong LiuSchool of Informatics, Xiamen University, Xiamen, Fujian 361102, China.
Xiangxiang ZengCollege of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan 410082, China.ORCID 0000-0003-1081-7658
Zhaohui SongHangzhou Dianzi University, Hangzhou, Zhejiang 310018, China.
Chen LinSchool of Informatics, Xiamen University, Xiamen, Fujian 361102, China.ORCID 0000-0002-2275-997X

Funding

Fujian Provincial Natural Science Foundation of China 2025J010001Natural Science Foundation of China 62432011
6 · The paper itself

Abstract

motivationMachine Learning Force Fields (MLFFs) have emerged as promising tools for accelerating molecular dynamics simulations. However, existing approaches often struggle to capture the geometric characteristics of long-range interactions, including distance and direction, remain sensitive to conformational variations, and lack adaptive mechanisms for balancing short- and long-range forces. To address these limitations, we propose GeoNet, a physicochemical-principle-guided framework for modeling dual-range atomic interactions. GeoNet employs geometric attention over atom-fragment bipartite graphs to characterize long-range dependencies, introduces dual-level augmentation to enforce semantic consistency across molecular conformations, and uses an adaptive fusion module to dynamically balance short- and long-range interaction pathways according to local atomic environments.

resultsExtensive experiments show that GeoNet consistently outperforms ten state-of-the-art baselines across the evaluated benchmarks. Moreover, it achieves the smallest model size and the shortest training time, demonstrating both superior predictive performance and computational efficiency. AVAILABILITY: The source code is publicly available at https://github.com/XMUDM/GeoNet.

Indexed as

Machine LearningMolecular Dynamics SimulationAlgorithms

Identifiers

PMID42569926
PMCPMC13516912

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.