Evidence map›Paper›PMID 42567675›Full record

ArticleGenes & development2026

RBM39 modulates UPR signaling through alternative splicing of IRE1α/

Jeongjin J Kim, Amit K Behera, Arun Prasath Damodaran, Shreya Kordale, Thomas Gonatopoulos-Pournatzis

Abstract read
In one paragraph

Article in Genes & development, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jeongjin J Kim *RNA Biology Laboratory, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Frederick, Maryland 21702, USA.
Amit K Behera *RNA Biology Laboratory, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Frederick, Maryland 21702, USA.
Arun Prasath DamodaranRNA Biology Laboratory, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Frederick, Maryland 21702, USA.
Shreya KordaleRNA Biology Laboratory, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Frederick, Maryland 21702, USA.
Thomas Gonatopoulos-PournatzisRNA Biology Laboratory, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Frederick, Maryland 21702, USA thomas.gonatopoulos@nih.gov.ORCID http://orcid.org/0000-0003-2669-2570

Funding

Map Novel Regulatory Networks that Control Alternative SplicingZIABC012019 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GONATOPOULOS-POURNATZIS, THOMAS · 2020 to 2025
$4.5M
CCR NIH HHS HHSN261200800001CIntramural NIH HHS ZIA BC012019NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

The unfolded protein response (UPR) preserves endoplasmic reticulum proteostasis through coordinated signaling pathways, including the IRE1α-XBP1 axis, which promotes adaptive transcriptional programs via noncanonical XBP1 mRNA splicing. However, upstream mechanisms regulating this pathway remain incompletely defined. Here, we apply CRASP-seq, a scalable RNA-coupled CRISPR screening platform, to systematically identify regulators of XBP1 splicing. We uncovered the U2 snRNP auxiliary factor RBM39 as a critical positive regulator of this process. Perturbation of RBM39 or U2 snRNP components induces alternative splicing of

Indexed as

Alternative SplicingEndoribonucleasesProtein Serine-Threonine KinasesRNA-Binding ProteinsSignal TransductionUnfolded Protein ResponseHEK293 CellsHumansX-Box Binding Protein 1EndoribonucleasesERN1 protein, humanProtein Serine-Threonine KinasesRNA-Binding ProteinsX-Box Binding Protein 1alternative splicingCRASP-seqERN1IRE1αpre-mRNA processingRBM39RNA-coupled CRISPR screeningU2 snRNPunfolded protein response (UPR)XBP1

Identifiers

PMID42567675
PMCPMC13532665

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.