ArticleScience advances2026
High-resolution mapping of embryonic genome activation unveils a decoupling of transcription activation from precocious H3K4me3 removal.
Article in Science advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The lack of temporal resolution in transcriptomic data during mammalian embryonic genome activation (EGA) has precluded the comprehensive understanding of the functional relationships between the various gene regulatory mechanisms governing this process. Here, we finely dissect the transcriptional dynamics of mouse EGA using precision in vitro fertilization (IVF) coupled with single-embryo RNA sequencing. Our highly temporally resolved dataset uncovers an extensive, step-wise remodeling of the embryonic messenger RNA landscape, affecting ∼30% of the total detectable transcripts over a 9-hour time frame. We capture the gradual shift from maternal to embryonic messenger RNAs, successfully identify ribosome biogenesis and translation as hallmarks of EGA, and find previously unidentified gene expression dynamics. We further uncover a set of eight histone demethylating enzymes among the earliest up-regulated EGA genes and leverage our precision-IVF to dissect the transcriptional versus developmental impact of histone H3 lysine-4 trimethylation (H3K4me3) remodeling after fertilization. Our results indicate that precocious removal of H3K4me3 from embryonic chromatin only modestly affects embryonic transcription without perturbing EGA timing, arguing against a major instructive role of precocious remodeling of maternally inherited H3K4me3 after fertilization on genome activation. High-resolution transcriptome mapping coupled with functional perturbations allows us to distinguish direct gene expression effects from general impacts on developmental timing, opening avenues for further quantitative characterization of the impact of epigenome remodeling on embryonic transcription.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.