Evidence map›Paper›PMID 42564763›Full record

ArticleNew microbes and new infections2026

Molecular and serological characterization of SARS-CoV-2 strains associated with viral encephalitis in Senegal during the COVID-19 pandemic.

Fatou Kiné Top, Jamil Kahwagi, Rokhaya Diagne, Al Ousseynou Seye, Rokhaya Faye, Moussa Moise Diagne, Babacar Ndiaye, Gamou Fall, Amadou Alpha Sall, Ousmane Faye and 4 more

Abstract read
In one paragraph

Article in New microbes and new infections, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Fatou Kiné TopInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Jamil KahwagiClinique de Neurosciences, Centre Hospitalier National de Pikine, Pikine, 16000, Senegal.
Rokhaya DiagneClinique de Neurosciences Ibrahima Pierre Ndiaye, Centre Hospitalier National Universitaire de Fann, Dakar, 10700, Senegal.
Al Ousseynou SeyeInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Rokhaya FayeInstitut Pasteur de Dakar, Immunophysiopathology and Infectious Diseases Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Moussa Moise DiagneInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Babacar NdiayeInstitut Pasteur de Dakar, Biomedical Laboratory, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Gamou FallInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Amadou Alpha SallInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Ousmane FayeInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Ndongo DiaInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Inès Vigan-WomasInstitut Pasteur de Dakar, Immunophysiopathology and Infectious Diseases Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Martin FayeInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.
Jean-Michel HeraudInstitut Pasteur de Dakar, Virology Department, 36 Avenue Pasteur, BP 220, Dakar, Senegal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beyond its socio-economic impact, COVID-19 has been associated with respiratory, gastrointestinal, neurological and neuropsychiatric symptoms across many countries, including in Senegal. While the SARS-CoV-2 virus primarily targets the respiratory and cardiovascular systems, if not detected and treated early, it can invade the nervous system and lead to severe neurological complications. This study focuses on the molecular and serological characterization of the SARS-CoV-2 strains associated with encephalitis manifestations of the disease. The presence of the virus in the central nervous system was confirmed by RT-PCR and sequencing and also serological techniques. Genetic analysis identified Delta (B.1.617.2-like) and Eta (B.1.525-like) variants in encephalitis patients. In silico analysis revealed three mutations (p.Pro4619Leu, p.Ala103Pro and p.Thr40Ile) predicted to affect protein function, generating hypotheses regarding their possible involvement in neurological manifestations. Among 11 patients with SARS-CoV-2-associated encephalitis, 30% had SARS-CoV-2 IgG antibodies in their serum, and 20% had them in cerebrospinal fluid (CSF). As part of the surveillance system for infectious encephalitis in Senegal (ENSENE), our data provided evidence of SARS-CoV-2 involvement in the epidemiology of viral encephalitis during the COVID-19 pandemic. Similar approaches should be promoted in future studies to investigate the biological significance of these mutations and improve the diagnosis and management of neurological manifestations associated with SARS-CoV-2 infection.

Indexed as

Anti-SARS-CoV-2 immunoglobulinsCerebrospinal fluidSARS-CoV-2SenegalSequencingSerologyViral encephalitis

Identifiers

PMID42564763
PMCPMC13444439

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.