Evidence map›Paper›PMID 42561940›Full record

ArticleStem cell reports2026

From stem cells to somites: Revealing genetic and exogenous factors of human embryogenesis.

Maria Teresa Alejo-Vinogradova, Yunna E Strøm, Lieke A Lamers, Yolanda W Chang, Martijn J Hendriksen, Mariya Moosajee, Michiel Vermeulen, Suzan Stelloo

Abstract read
In one paragraph

Article in Stem cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maria Teresa Alejo-VinogradovaDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands.
Yunna E StrømDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands.
Lieke A LamersDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands.
Yolanda W ChangDepartment of Urology, Radboud Institute for Medical Innovation, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Martijn J HendriksenDepartment of Urology, Radboud Institute for Medical Innovation, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Mariya MoosajeeUCL Institute of Ophthalmology, University College London, London EC1V 9EL, UK; The Francis Crick Institute, London NW1 1AT, UK; Moorfields Eye Hospital NHS Foundation Trust, London EC1V 2PD, UK.
Michiel VermeulenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands; Division of Molecular Genetics, Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands. Electronic address: michiel.vermeulen@ru.nl.
Suzan StellooDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands; Department of Urology, Radboud Institute for Medical Innovation, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands. Electronic address: suzan.stelloo@radboudumc.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem-cell-based human embryo models offer an ethically tractable platform for studying early human development. This study employs somitoids, three-dimensional models of human somitogenesis, to investigate how transcriptional programs and culture conditions influence somite formation and segmentation. We show that pre-differentiation culture medium impacts the developmental potential of induced pluripotent stem cells (iPSCs), with StemFit medium and Matrigel embedding outperforming mTeSR Plus medium in generating robust somite-like structures. Strikingly, these differences arise despite only subtle changes in transcriptomic and time-resolved proteomic profiles. P300-based proximity labeling also reveals a largely overlapping set of chromatin-associated regulators across iPSC conditions. In somitoids, enhancer-associated profiling highlights factors linked to somitogenesis, including MESP2 and TBX6. Knockout of three identified regulators, BPTF, RBPJ, and CITED2, demonstrate their essential roles in somite formation. Together, these findings highlight how culture conditions and enhancer-associated networks influence early human development and demonstrate somitoids as a scalable system for functional genomics.

Indexed as

Embryonic DevelopmentInduced Pluripotent Stem CellsSomitesCell DifferentiationChromatinEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHumansProteomicsTranscription FactorsChromatinTranscription Factorschromatinembryonic developmentenhancerspluripotencyproteomicsproximity labelingsomitogenesissomitoids

Identifiers

PMID42561940
PMCPMC13555414

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.