Evidence map›Paper›PMID 42561914›Full record

ArticleCell2026

Human acrocentric chromosome short-arm de novo mutation and recombination.

Jiadong Lin, F Kumara Mastrorosa, Michelle D Noyes, DongAhn Yoo, Arang Rhie, David Porubsky, Kendra Hoekzema, Katherine M Munson, Nidhi Koundinya, W Scott Watkins and 5 more

Abstract read
In one paragraph

Article in Cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Rapid centromere turnover and the adaptive radiation of lemurs.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Origin and evolution of acrocentric chromosomes in human and great apes.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Jiadong LinDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
F Kumara MastrorosaDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Michelle D NoyesDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
DongAhn YooDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Arang RhieGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
David PorubskyDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg 69117, Germany.
Kendra HoekzemaDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Katherine M MunsonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Nidhi KoundinyaDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
W Scott WatkinsDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Lynn B JordeDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Aaron R QuinlanDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Deborah W NeklasonDepartment of Internal Medicine, University of Utah, Salt Lake City, UT 84112, USA.
Adam M PhillippyGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Evan E EichlerDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA. Electronic address: ee3@uw.edu.

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
Human Genetic Variation and DiseaseR35GM118335 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI JORDE, LYNN · 2016 to 2025
$5.1M
Sequence-resolved structural variation of human genomesR01HG010169 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2018 to 2026
$4.5M
NHGRI NIH HHS R01 HG002385NHGRI NIH HHS R01 HG010169NIGMS NIH HHS R35 GM118335
6 · The paper itself

Abstract

Highly repetitive short arms of human acrocentric chromosomes have remained largely inaccessible to studies of meiotic recombination and de novo mutation. Integrating long-read and complementary sequencing approaches, we created 156 phased short arms and assessed 107 transmissions from 23 samples in a four-generation human pedigree. We observed a significant depletion of p-arm allelic recombination, although one ectopic recombination was identified between chromosomes 13 and 21, mediated by a large segmental duplication near the SST1 array. In contrast, 18 maternal-biased q-arm allelic recombination events were significantly enriched near the centromere. Relative to autosomal euchromatin, acrocentric short arms showed a 10-fold higher single-nucleotide variant rate, with a distinct mutation spectrum marked by reduced C>T but increased C>G and A>C mutations. These findings suggest that acrocentric sequence composition biases and limited allelic recombination contribute to an elevated mutation rate and promote distinct mutational processes linked to mismatch repair defects and oxidative DNA damage.

Indexed as

MutationRecombination, GeneticAllelesCentromereFemaleHumansMalePedigreeacrocentric short-arm assemblyallelic recombinationde novo mutationectopic recombinationmutational signatures

Identifiers

PMID42561914
PMCPMC13464065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.