Evidence map›Paper›PMID 42560944›Full record

ArticlePloS one2026

BOLDconnectR: An R package for streamlined retrieval, transformation, and analysis of DNA barcode data on BOLD.

Sameer M Padhye, Liliana Ballesteros-Mejia, Josh Agda, Jireh Agda, Paul D N Hebert, Sujeevan Ratnasingham

Abstract read
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sameer M PadhyeCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.ORCID https://orcid.org/0000-0002-2125-3213
Liliana Ballesteros-MejiaCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.
Josh AgdaCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.
Jireh AgdaCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.
Paul D N HebertCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.
Sujeevan RatnasinghamCentre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA barcode data are essential infrastructure for biodiversity science as they enable scalable species identification and integrative analyses that link sequences to specimens, taxonomy, and geography. The Barcode of Life Data System (BOLD) is a centralized bioinformatics workbench that supports the full barcode data lifecycle: including acquisition, storage, validation, analysis, and dataset publication within a secure collaboration model. While BOLD's web interface is optimized for interactive dataset assembly and publication, many researchers require programmatic access to both public data and permissioned private records to build reproducible pipelines for curation and analysis prior to release. We introduce BOLDconnectR, an R package that provides authenticated access to BOLD, returns records in the Barcode Core Data Model (BCDM), performs automated transformation into commonly used R data structures, and enables customizable analytic workflows that generate publication-ready outputs.

Indexed as

Computational BiologyDNA Barcoding, TaxonomicSoftwareBiodiversityInformation Storage and Retrieval

Identifiers

PMID42560944
PMCPMC13446681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.