Evidence map›Paper›PMID 42553517›Full record

ArticleNAR genomics and bioinformatics2026

The promise of long-read RNA-seq: reducing bias in analyses of allele imbalance.

Nadja Nolte, Marko Petek, Pablo Angulo Lara, Logan Mulroney, Francesco Nicassio, Fabio Marroni, Lauren McIntyre

Abstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nadja NolteDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana 1000, Slovenia.ORCID https://orcid.org/0000-0003-3737-2011
Marko PetekDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana 1000, Slovenia.ORCID https://orcid.org/0000-0003-3644-7827
Pablo Angulo LaraCenter for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia, Milano 20139, Italy.
Logan MulroneyCenter for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia, Milano 20139, Italy.
Francesco NicassioCenter for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia, Milano 20139, Italy.ORCID https://orcid.org/0000-0002-5954-5318
Fabio MarroniDepartment of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine 33100, Italy.ORCID https://orcid.org/0000-0002-1556-5907
Lauren McIntyreDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida Cancer Center, University of Florida, Gainesville, FL 32611, United States.ORCID https://orcid.org/0000-0002-0077-3359

Funding

Rapid evolution of pigmentation in D. melanogaster: from cis regulation to phenotypeR01GM137430 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MCINTYRE, LAUREN M., SCHMIDT, PAUL · 2021 to 2024
$2.2M
NIGMS NIH HHS R01 GM137430
6 · The paper itself

Abstract

Inaccurate allele and gene expression counts due to map bias and genome ambiguity lead to high false positive and false negative rates in studies of allelic imbalance. We demonstrate that long read RNA sequencing (RNA-seq) and straightforward quality control measures can be used to reduce bias in allele counts in case studies from four species:

Indexed as

Allelic ImbalanceSequence Analysis, RNAAllelesAnimalsChromosome MappingDrosophila melanogasterHumansSolanum tuberosum

Identifiers

PMID42553517
PMCPMC13434171

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.