ArticleFrontiers in microbiology2026
Differential shaping of equine gut microbiota structure and function by breed and feeding regimen.
Article in Frontiers in microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Background: The gut microbiota plays an essential role in host energy metabolism and immune function. Horses are non-ruminant herbivores that rely heavily on hindgut microbial fermentation to meet their energy requirements. However, the relative contributions of host genetic background (breed) and environmental factors (feeding regimen and geographical location) to shaping the equine gut microbiota remain poorly understood. Methods: In this study, 16S rRNA gene sequencing and functional prediction analysis were performed on 139 equine fecal samples to systematically investigate the differential effects of breed and feeding regimen on the gut microbiota. Samples were collected from 30 Thoroughbreds (TH), 31 stabled hybrid horses (HH1), 30 grazing hybrid horses (HH2) (with HH1 and HH2 sired by Thoroughbreds out of Mongolian mares), 32 Mongolian horses (MH), and 16 Warmblood horses (WBH1 and WBH2). Alpha and beta diversity analyses, taxonomic profiling, and PERMANOVA were used to assess microbial composition and the contributions of different factors. Results: Alpha diversity analysis revealed that the richness and diversity of the TH, HH1, HH2, and MH groups were significantly higher than those of the Warmblood horses ( Conclusion: This study provides evidence that breed establishes the foundational framework of the gut microbiota, while feeding regimen performs fine-tuning functions. We also systematically characterized the unique microbial composition of Warmblood horses, offering a scientific basis for breed-specific health management, precision nutritional interventions, and future disease risk monitoring in horses. Although all horses appeared clinically healthy, the distinct microbial composition observed in Warmblood horses warrants further investigation to determine its biological significance.
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