Evidence map›Paper›PMID 42547832›Full record

ArticleNature plants2026

A VIM2/4 deletion, and premature truncations of CMT2 and FBX5, drive DNA methylation changes after colonization of a novel habitat.

Johan Zicola, Emmanuel Tergemina, Ahmed F Elfarargi, Mehmet Göktay, Célia Neto, Robert J Schmitz, Angela M Hancock

Abstract read
In one paragraph

Article in Nature plants, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Johan ZicolaMax Planck Institute for Plant Breeding Research, Cologne, Germany.ORCID http://orcid.org/0000-0002-7201-8221
Emmanuel TergeminaMax Planck Institute for Plant Breeding Research, Cologne, Germany.ORCID http://orcid.org/0000-0001-8747-7212
Ahmed F ElfarargiMax Planck Institute for Plant Breeding Research, Cologne, Germany.ORCID http://orcid.org/0000-0003-3726-1848
Mehmet GöktayMax Planck Institute for Plant Breeding Research, Cologne, Germany.
Célia NetoMax Planck Institute for Plant Breeding Research, Cologne, Germany.ORCID http://orcid.org/0000-0003-3256-5228
Robert J SchmitzDepartment of Genetics, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0001-7538-6663
Angela M HancockMax Planck Institute for Plant Breeding Research, Cologne, Germany. ahancock@purdue.edu.ORCID http://orcid.org/0000-0002-4768-3377

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) CVI_ADAPT 638810National Science Foundation (NSF) MCB-2242696
6 · The paper itself

Abstract

DNA methylation is important to maintain genome stability, but alterations in genome-wide methylation patterns can produce widespread genomic effects, with the potential to facilitate rapid adaptation. Here we investigate DNA methylation evolution in Arabidopsis thaliana during its colonization of the drought-prone Cape Verde Islands (CVI). We identified three high-impact changes in genes linking histone modification to DNA methylation that underlie variation in DNA methylation within CVI. We show that gene body methylation is reduced in CVI relative to the Moroccan outgroup due to a 2.7-kb deletion between two VARIANT IN METHYLATIONgenes (VIM2and VIM4), causing aberrant expression of the VIM2/4 homologues. Disruptions of CHROMOMETHYLASE 2 (CMT2) and a newly identified DNA methylation modulator, F-BOX PROTEIN 5 (FBX5), which we validated using CRISPR mutant analysis, contribute to DNA methylation of transposable elements within CVI. Overall, our results reveal rapid methylome evolution driven largely by high-impact variants in three genes.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Cytosine MethylasesDNA MethylationArabidopsis ProteinsDNA-Cytosine Methylases

Identifiers

PMID42547832
PMCPMC13481252

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.