Evidence map›Paper›PMID 42547508›Full record

ArticleNature communications2026

Uncovering ectopic GC-like niches for tumor reactive lymphocyte priming in lung adenocarcinoma using Stereo-XCR-seq.

Xiaojuan Zhan, Mengye Huang, Yang Zhang, Zhong Liu, Chengwu Liu, Yanying Guo, Yi Liu, Wenwen Zhou, Yixin Yan, Hui Zeng and 33 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Xiaojuan Zhan *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Mengye Huang *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Yang Zhang *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Zhong Liu *BGI Research, Shenzhen, China.
Chengwu LiuDepartment of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu, China.
Yanying GuoBGI Research, Shenzhen, China.
Yi LiuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Wenwen ZhouCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Yixin YanBGI Research, Hangzhou, China.ORCID 0000-0003-3486-8791
Hui ZengCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Yingqi DongDepartment of Otolaryngology-Head and Neck Surgery, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Xuan DongBGI Research, Hangzhou, China.ORCID 0000-0001-8288-322X
Xiaoyu ChenBGI Research, Hangzhou, China.
Haohang YangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Rong MaBGI Research, Hangzhou, China.
Fan ZhuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Xubin ZhengSchool of Computing and Information Technology, Great Bay University, Dongguan, China.ORCID 0000-0003-2322-857X
Xinxing LiBGI Research, Hangzhou, China.
Sen HouDepartment of Gastroenterological Surgery, Peking University People's Hospital, Beijing, China.
Zhidong GaoDepartment of Gastroenterological Surgery, Peking University People's Hospital, Beijing, China.ORCID 0000-0002-8415-7587
Jinwen YinZhejiang University Liangzhu Laboratory, Hangzhou, China.
Francis Ka-Ming ChanZhejiang University Liangzhu Laboratory, Hangzhou, China.ORCID 0000-0002-4803-8353
Qin WuZhejiang Cancer Hospital, Key Laboratory of Zhejiang Province for Aptamers and Theranostics, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, China.ORCID 0009-0008-0901-9943
Senyi DengInstitute of Thoracic Oncology and Department of Thoracic Surgery, West China Hospital, Sichuan University, Chengdu, China.
Yin YaoDepartment of Otolaryngology-Head and Neck Surgery, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Shengbao SuoGuangzhou National Laboratory, Guangzhou, China.ORCID 0009-0008-8943-2956
Chuanyu LiuState Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Shenzhen, China.ORCID 0000-0003-2258-0897
Longqi LiuBGI Research, Shenzhen, China.ORCID 0000-0002-5828-5542
Xun XuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-5338-5173
Yong HouCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Haoran TaoBGI Research, Shenzhen, China.
Xinlei AiSchool of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0002-2827-8376
Yuliang DongBGI Research, Shenzhen, China.
Tao ZengBGI Research, Shenzhen, China.
Hanyong SunDepartment of Liver Surgery, Renji Hospital Affiliated to Shanghai Jiao Tong University, School of Medicine, Shanghai, China.
Young LiBGI Research, Shenzhen, China.ORCID 0000-0002-6595-2577
Li ZuoInnovation and Entrepreneurship Laboratory for College Students, Laboratory of Molecular Biology, Department of Biochemistry, Anhui Medical University, Hefei, China.
Hua WangLaboratory Animal Center, Key Laboratory of Anti-inflammatory and Immune Medicine (Anhui Medical University), Ministry of Education, Hefei, China.ORCID 0000-0002-2605-5697
Xin LiuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID 0000-0003-3256-2940
Zhifang WuShanxi Medical University-BGI Collaborative Center for Future Medicine, Shanxi Medical University, Taiyuan, China.
Jingying ZhouBGI Research, Shenzhen, China. zhoujy@cuhk.edu.hk.ORCID 0000-0002-9740-6159
Zexian ZengPeking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China. zexianzeng@pku.edu.cn.ORCID 0000-0002-3905-3244
Yu FengState Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Shenzhen, China. fengyu@suat-sz.edu.cn.ORCID 0000-0001-8358-8740

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82541041
6 · The paper itself

Abstract

T/B cell receptors (T/BCR), coordinating antigen-targeting immune response, play crucial roles in anti-tumor immune response. Tracking T and B cell clonal evolution in situ at single-cell resolution is essential for understanding the adaptive immune responses. To address the lack of tools for in situ single-cell T/BCR (XCR) sequencing, we develop Stereo-XCR-seq, an efficient method for retrieving and sequencing TCR and BCR from spatial transcriptome cDNA libraries at subcellular resolution. Stereo-XCR-seq enables high-fidelity, unbiased recovery of XCR sequences alongside spatial transcriptomics in extensive tissues, facilitating the identification of heterogeneous lymphoid aggregates with distinct clonal activities in situ. Using Stereo-XCR-seq, we uncover that IgG

Indexed as

Adenocarcinoma of LungGerminal CenterLung NeoplasmsT-LymphocytesAnimalsB-LymphocytesFemaleHumansImmunoglobulin GPlasma CellsReceptors, Antigen, B-CellReceptors, Antigen, T-CellSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisSpatial TranscriptomicsImmunoglobulin GReceptors, Antigen, B-CellReceptors, Antigen, T-Cell

Identifiers

PMID42547508
PMCPMC13434001

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.