Evidence map›Paper›PMID 42542491›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Reactive DNA Probes for Cross-Linking with Specific Amino Acids of Protein.

Denise-Liu' Gracias Leone, Ambra Spampinato, Michal Hocek

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Denise-Liu' Gracias LeoneKU Leuven - Department of Cellular and Molecular Medicine, Herestraat 49, 3000, Leuven, Belgium.
Ambra SpampinatoInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Praha 6, Czech Republic.
Michal HocekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Praha 6, Czech Republic. michal.hocek@uochb.cas.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This chapter serves as a practical guide to designing and synthesizing reactive DNA probes for site-selective covalent cross-linking with proteins. By using enzymatic incorporation of modified nucleotides, researchers can create probes that selectively target amino acid residues such as cysteine, lysine, arginine, and tryptophan. The approach exploits the proximity effect for precise, reagent-free cross-linking under mild conditions, making it a powerful tool for mapping protein-DNA interactions and enabling stable bioconjugation for applications in chemical biology, diagnostics, and therapeutics.

Indexed as

Amino AcidsCross-Linking ReagentsDNA ProbesProteinsDNAAmino AcidsCross-Linking ReagentsDNADNA ProbesProteinsBioconjugationDNA–protein crosslinksNucleotidesOligonucleotidesProteins

Identifiers

PMID42542491

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.