Evidence map›Paper›PMID 42539305›Full record

ArticlebioRxiv : the preprint server for biology2026

Orthogonal CRISPR screens and human liver chimeric mice identify hepatitis B virus host factors.

Catherine A Freije, Georgios Dangas, Antonis Athanasiadis, Evgenia Moschogianni, Madeleine K Sanders, Allan Henrique Depieri Cataneo, Chloe K Boehm, Maria Bousali, Dar-Yin Li, Sooyoung Lee and 25 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Catherine A FreijeLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-1939-3102
Georgios DangasLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0009-0003-3771-1279
Antonis AthanasiadisLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0009-0000-6268-6683
Evgenia MoschogianniLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0009-0008-0375-9633
Madeleine K SandersLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0009-0006-8356-1461
Allan Henrique Depieri CataneoLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-3567-7471
Chloe K BoehmLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-6136-3257
Maria BousaliLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-2829-1642
Dar-Yin LiLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0009-0007-3920-0340
Sooyoung LeeVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0002-6829-9948
Guillaume CornelisVir Biotechnology Inc., San Francisco, CA 94158, USA.
Gary LoVir Biotechnology Inc., San Francisco, CA 94158, USA.
Leah B SoriagaVir Biotechnology Inc., San Francisco, CA 94158, USA.
Amalio TelentiVir Biotechnology Inc., San Francisco, CA 94158, USA.
Julia di IulioVir Biotechnology Inc., San Francisco, CA 94158, USA.
Ana L P MosimannLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-3504-5562
Juliano BordignonLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-1965-6152
Kirin KarverLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.
Lukas FuLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.
Kenneth C LevensonLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.
Chenhui ZouLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Yichen ZhouLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Corrine QuirkLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Leon L SeifertLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-0089-7669
Xupeng HongLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-7091-6108
Anushka RajeshVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0002-7729-0865
Yingpu YuLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0003-4837-5744
Andreas S PuschnikVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0002-9605-9458
Florian A LemppVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0001-6103-8078
Herbert W VirginVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0001-8580-7628
Seungmin HwangVir Biotechnology Inc., San Francisco, CA 94158, USA.ORCID 0000-0003-0846-5462
William M SchneiderLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Ype P de JongLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0001-6357-2370
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0003-3087-8079
Eleftherios MichailidisLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-9907-4346

Funding

Toward Safer Gene Therapy for Hemophilia AP01HL160472 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI Ype Peter De Jong · 2022 to 2026
$15.1M
Launching HBV with RNA to assess antiviral resistance and explore fundamental aspects of virus-host biologyR01AI150275 · NIAID · ROCKEFELLER UNIVERSITY · PI Charles M Rice · 2020 to 2026
$4.4M
A proteomics atlas of HIV/HBV infections for curing HBVR01AI181682 · NIAID · EMORY UNIVERSITY · PI Eleftherios Michailidis · 2024 to 2026
$2.1M
Modeling alcohol toxicity in human hepatocytesR01AA027327 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI DE JONG, YPE PETER · 2019 to 2023
$1.9M
Impact of HIV co-infections and comorbidities on circadian rhythm in the liverDP1DK139804 · NIDDK · EMORY UNIVERSITY · PI Eleftherios Michailidis · 2024 to 2026
$1.7M
The Metabolic Crossroads: Decoding Fentanyl's Impact on HIV/HBV Co-infection for Targeted InterventionsDP1DA066168 · NIDA · EMORY UNIVERSITY · PI Eleftherios Michailidis · 2026 to 2026
$1.1M
Elucidating the host and viral determinants of treatment response in chronic hepatitis BR01AI190067 · NIAID · ROCKEFELLER UNIVERSITY · PI Ype Peter De Jong, Eleftherios Michailidis · 2026 to 2026
$863k
Primary cell culture models of HIV/HBV co-infectionR21AI176944 · NIAID · EMORY UNIVERSITY · PI MICHAILIDIS, ELEFTHERIOS · 2023 to 2024
$526k
Virus-host interactions for a cure against HBVR56AI182395 · NIAID · EMORY UNIVERSITY · PI MICHAILIDIS, ELEFTHERIOS · 2024 to 2024
$510k
Host and viral determinants of hepatitis B virus transcriptionK99AI190315 · NIAID · ROCKEFELLER UNIVERSITY · PI Catherine Amanda Freije · 2026 to 2026
$196k
NHLBI NIH HHS P01 HL160472NIAAA NIH HHS R01 AA027327NIAID NIH HHS K99 AI190315NIAID NIH HHS R01 AI150275NIAID NIH HHS R01 AI181682NIAID NIH HHS R01 AI190067NIAID NIH HHS R21 AI176944NIAID NIH HHS R56 AI182395NIDA NIH HHS DP1 DA066168NIDDK NIH HHS DP1 DK139804
6 · The paper itself

Abstract

Hepatitis B virus (HBV) chronically infects approximately 250 million people worldwide, and reliable curative therapies are lacking. A broader understanding of viral-host interactions could accelerate efforts to find new host-centric therapeutic targets. However, inefficient cell culture systems and limited replication markers compatible with pooled screening have precluded the widespread use of genetic perturbation screens. Here, we performed the first pooled, genome-wide CRISPR-Cas9 knockout (KO) screen with authentic HBV infection and integrated these results with two orthogonal pooled screens to identify host factors. We selected 72 genes for a multi-step assessment that included arrayed validation assays using both HBV infection and pgRNA transfection. We then independently tested thirteen genes using high-efficiency bulk KO experiments to guide further investigations of both antiviral and proviral factors. In both KO and siRNA-mediated knockdown experiments, depletion of the top antiviral factor,

Identifiers

PMID42539305
PMCPMC13420443

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.