Evidence map›Paper›PMID 42531161›Full record

ArticleThe Plant cell2026

HHO5 orchestrates dose-dependent feedback regulation of organic versus inorganic nitrogen signaling in Arabidopsis.

Will E Hinckley, Joseph Swift, Francisco Romei, Jorge P Muschietti, Samantha Frangos, Shao-Shan Carol Huang, Gloria M Coruzzi, Mariana Obertello

Abstract read
In one paragraph

Article in The Plant cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Will E HinckleyCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Pl, New York, NY 10003, United States.ORCID 0000-0002-9197-4972
Joseph SwiftCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Pl, New York, NY 10003, United States.ORCID 0000-0001-9559-1699
Francisco RomeiInstituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), Vuelta de Obligado 2490, Buenos Aires C1428ADN, Argentina.
Jorge P MuschiettiInstituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), Vuelta de Obligado 2490, Buenos Aires C1428ADN, Argentina.ORCID 0000-0002-5719-4833
Samantha FrangosCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Pl, New York, NY 10003, United States.ORCID 0009-0004-1359-276X
Shao-Shan Carol HuangCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Pl, New York, NY 10003, United States.ORCID 0000-0001-7811-0398
Gloria M CoruzziCenter for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Pl, New York, NY 10003, United States.ORCID 0000-0003-2608-2166
Mariana ObertelloInstituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), Vuelta de Obligado 2490, Buenos Aires C1428ADN, Argentina.ORCID 0000-0001-7616-8887

Funding

Sequence, chromatin, and cellular contexts of transcription factor- DNA interaction and functionR35GM138143 · NIGMS · NEW YORK UNIVERSITY · PI Shao-shan Carol Huang · 2020 to 2026
$2.4M
The Quantitative Biological Systems Training (QBIST) ProgramT32GM132037 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham, Christine Vogel · 2019 to 2026
$2.3M
Hit-and-Run transcription: The impact of transient interactions in dynamic gene regulatory networks that mediate rapid nutrient signalingR01GM121753 · NIGMS · NEW YORK UNIVERSITY · PI CORUZZI, GLORIA, SHASHA, DENNIS ELLIOTT · 2020 to 2023
$1.7M
ANPCyT PICT 2015-3052ANPCyT PICT 2019-4328ANPCyT PIP 11420100100242CONICET-PUENational Institutes of Health National Institute of General Medical Sciences RO1-GM121753National Research CouncilNIGMS NIH HHS R01 GM121753NIGMS NIH HHS R35 GM138143NIGMS NIH HHS T32 GM132037NIH HHS 1T32GM132037-01NIH HHS R35GM138143NIH HHS RO1-GM121753
6 · The paper itself

Abstract

A major goal in agriculture is to engineer crops to maintain yield with less nitrogen (N) fertilizer. Important regulators of plant N-responses include HRS1 HOMOLOG (HHO) transcription factors (TFs); yet, their redundant repressive mode of action hinders functional analyses. Here, we highlight HHO5 as a unique HHO TF based on its phylogenetic position, phloem specific expression, and dual role in regulating responses to inorganic and organic N-dose signals. Our results support a model whereby HHO5 mediates feedback repression of inorganic nitrate uptake under organic N satiety: (i) Meta-analyses revealed HHO5 expression is repressed by inorganic N, but induced by organic N treatments. (ii) HHO5 directly binds and represses nitrate response genes, but indirectly induces organic N-response genes. (iii) HHO5 indirect target gene induction occurs via WRKY partner TFs, validated using a cell-based DoubleTARGET TF co-perturbation assay. (iv) HHO5 initiates a validated gene regulatory network path which encompasses ∼12% of the N-dose response genes in planta. (v) Phenotypically, single hho5 T-DNA mutants show reduced N-dose dependent growth, and decreased seed N content. (vi) HHO5 represses nitrate uptake but induces root growth responses to Glu in planta. Overall, our findings support a model wherein HHO5 orchestrates dose dependent feedback regulation of organic versus inorganic N-signaling in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsNitrogenSignal TransductionTranscription FactorsFeedback, PhysiologicalGene Expression Regulation, PlantNitratesPhloemPhylogenyPlants, Genetically ModifiedArabidopsis ProteinsNitratesNitrogenTranscription Factors

Identifiers

PMID42531161
PMCPMC13421923

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.