Evidence map›Paper›PMID 42531153›Full record

ArticleThe Plant journal : for cell and molecular biology2026

Integrative crystallography and molecular dynamics reveal isoform-specific ligand interaction networks in C4 and nonC4 plant NADP-malic enzyme.

Jonas M Böhm, Sebastián Klinke, Fernando Zamarreño, Niels Schneberger, Rosario Lunari, Mariana Saigo, María F Drincovich, Simone Willms, Marcelo Costabel, Veronica G Maurino and 1 more

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jonas M Böhm *Molecular Plant Physiology, Institute for Cellular and Molecular Botany (IZMB), University of Bonn, Kirschallee 1, Bonn, 53115, Germany.ORCID https://orcid.org/0009-0008-6498-5802
Sebastián Klinke *Fundación Instituto Leloir, IIBBA-CONICET and Plataforma Argentina de Biología Estructural y Metabolómica PLABEM, Avenue Patricias Argentinas 435, Buenos Aires, C1405BWE, Argentina.ORCID https://orcid.org/0000-0002-8777-0870
Fernando Zamarreño *Grupo de Biofísica, Instituto de Física del Sur (IFISUR), Departamento de Física, Universidad Nacional del Sur (UNS), CONICET, Bahía Blanca, 8000, Argentina.ORCID https://orcid.org/0000-0002-5022-2010
Niels SchnebergerBiomedical Sciences Research Complex, School of Biology, University of St Andrews, North Haugh, St Andrews, KY16 9ST, UK.ORCID https://orcid.org/0000-0002-4703-5425
Rosario LunariCentro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), University of Rosario, Suipacha 570, Rosario, 2000, Argentina.ORCID https://orcid.org/0009-0004-5517-1859
Mariana SaigoCentro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), University of Rosario, Suipacha 570, Rosario, 2000, Argentina.
María F DrincovichCentro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), University of Rosario, Suipacha 570, Rosario, 2000, Argentina.ORCID https://orcid.org/0000-0003-4897-3285
Simone WillmsMolecular Plant Physiology, Institute for Cellular and Molecular Botany (IZMB), University of Bonn, Kirschallee 1, Bonn, 53115, Germany.
Marcelo CostabelGrupo de Biofísica, Instituto de Física del Sur (IFISUR), Departamento de Física, Universidad Nacional del Sur (UNS), CONICET, Bahía Blanca, 8000, Argentina.
Veronica G MaurinoMolecular Plant Physiology, Institute for Cellular and Molecular Botany (IZMB), University of Bonn, Kirschallee 1, Bonn, 53115, Germany.ORCID https://orcid.org/0000-0002-3124-1451
Clarisa E AlvarezCentro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), University of Rosario, Suipacha 570, Rosario, 2000, Argentina.ORCID https://orcid.org/0000-0001-7279-6974

Funding

Agencia Nacional de Promoción Científica y Tecnológica PICT-2019-00079Deutsche Forschungsgemeinschaft 441941117Deutsche Forschungsgemeinschaft MA2379/20-1
6 · The paper itself

Abstract

NADP-dependent malic enzyme (NADP-ME) has been repeatedly co-opted into distinct metabolic roles across plants, most prominently as the decarboxylase of NADP-ME-type C4 photosynthesis. In maize, the plastidic C4- and nonC4-NADP-ME isoforms are closely related in sequence yet display strikingly different catalytic properties, suggesting that small changes in ligand recognition can re-tune reaction chemistry. However, mechanistic interpretation has been hampered by the scarcity of plant NADP-ME structures captured in catalytically informative, ligand-bound states. Here, we integrate X-ray crystallography with structure-guided docking and atomistic molecular dynamics (MD) to resolve ligand-site interaction networks across reaction states. We determined a 2.55 Å structure of maize plastidic nonC4-NADP-ME bound to NADP

Indexed as

Malate DehydrogenaseMalate Dehydrogenase (NADP+)Plant ProteinsZea maysCatalytic DomainCrystallography, X-RayLigandsMagnesiumMalatesMolecular Docking SimulationMolecular Dynamics SimulationNADPPyruvic AcidLigandsMagnesiumMalate DehydrogenaseMalate Dehydrogenase (NADP+)malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)NADPPlant ProteinsPyruvic Acidactive‐site architecturecrystal structureevolutionmolecular dynamicsNADP‐malic enzyme

Identifiers

PMID42531153
PMCPMC13422764

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.