Evidence map›Paper›PMID 42530561›Full record

ArticleCurrent protocols2026

Protein Extraction From Mycobacterium spp. for Identification by MALDI-TOF Mass Spectrometry.

Lucas Evangelista Marques, Stephanie Chrystine Balestro Mota, Christoffel Opperman, Robin Mark Warren, Emilyn Costa Conceição, Cristina Viana-Niero

Abstract read
In one paragraph

Article in Current protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lucas Evangelista MarquesDepartment of Microbiology, Immunology and Parasitology, Federal University of São Paulo, São Paulo, Brazil.ORCID https://orcid.org/0000-0003-2597-5149
Stephanie Chrystine Balestro MotaDepartment of Microbiology, Immunology and Parasitology, Federal University of São Paulo, São Paulo, Brazil.
Christoffel OppermanSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Robin Mark WarrenSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Emilyn Costa ConceiçãoSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Cristina Viana-NieroDepartment of Microbiology, Immunology and Parasitology, Federal University of São Paulo, São Paulo, Brazil.ORCID https://orcid.org/0000-0002-1068-7884

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
6 · The paper itself

Abstract

The identification of mycobacteria remains challenging due to the high species diversity within the genus and the lack of a molecular method able to identify them in a single assay. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been used as a rapid and promising alternative for bacterial identification; however, its reliability is highly dependent on effective protein extraction. This article describes a protocol specifically developed for the identification and species-level discrimination of Mycobacterium spp. that integrates thermal inactivation, multiple biomass washes, mechanical disruption with zirconia beads, protein extraction using formic acid and acetonitrile, quality control, and troubleshooting. This procedure is compatible with Bruker MALDI Biotyper systems and is designed to meet biosafety level (BSL)-2 and BSL-3 laboratory requirements, ensuring operator safety and preventing aerosol generation. Emphasis is placed on standardizing critical steps, reproducibility, and safe handling of pathogenic strains. This protocol can be applied in both diagnostic and research laboratories, offering a reliable and standardized approach to preparing mycobacterial samples for analysis by MALDI-TOF MS. © 2026 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol: Protein extraction from Mycobacterium spp. cultured on solid media for identification by MALDI-TOF mass spectrometry Support Protocol: Preparation and quality control of mycobacterial cultures for MALDI-TOF MS analysis.

Indexed as

Bacterial ProteinsMycobacteriumSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBacterial ProteinsMALDI‐TOFmass spectrometryMycobacteriumprotein extractionsample preparation

Identifiers

PMID42530561
PMCPMC13422670

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.