Evidence map›Paper›PMID 42523455›Full record

ArticlebioRxiv : the preprint server for biology2026

K63-linked ubiquitin chains mark inactive Smoothened for packaging into ciliary extracellular vesicles.

Mingli Zhu, Yash Raj, Gary A Bradshaw, David U Mick, Marian Kalocsay, Maxence V Nachury

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mingli ZhuDepartment of Ophthalmology, University of California San Francisco; CA 94143, USA.
Yash RajDepartment of Ophthalmology, University of California San Francisco; CA 94143, USA.
Gary A BradshawDepartment of Systems Biology, Laboratory of Systems Pharmacology, Harvard Medical School; Boston, MA 02115, USA.
David U MickCenter for Molecular Signaling, Department of Medical Biochemistry and Molecular Biology, Saarland University School of Medicine; Homburg, Germany.ORCID 0000-0003-1427-9412
Marian KalocsayDepartment of Systems Biology, Laboratory of Systems Pharmacology, Harvard Medical School; Boston, MA 02115, USA.
Maxence V NachuryDepartment of Ophthalmology, University of California San Francisco; CA 94143, USA.ORCID 0000-0003-4918-1562

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ULLIAN, ERIK M · 1985 to 2024
$16.8M
Quality control of the primary cilium proteomeR01GM089933 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Maxence V Nachury · 2010 to 2026
$5.8M
NEI NIH HHS P30 EY002162NIGMS NIH HHS R01 GM089933
6 · The paper itself

Abstract

Signaling receptors can exit cilia either by retrieval back into the cell or by secretion in extracellular vesicles (EVs), a process known as ectocytosis. The mechanisms that govern ectocytosis remain poorly understood. Here, we leverage quantitative proteomic profiling to identify the Hedgehog signaling receptor Smoothened (SMO) as a major cargo of cilia-derived EVs. Surprisingly, ligands that promote ciliary accumulation of SMO strongly suppressed its packaging into EVs, indicating that ectocytosis selectively packages specific conformational states of SMO. We further find that SMO packaged into EVs is extensively modified with K63linked ubiquitin chains. Preventing SMO ubiquitination or selectively removing K63-linked ubiquitin chains from SMO markedly reduced its secretion into EVs and caused SMO accumulation within cilia. Together, these results identify K63-linked ubiquitin chains as a sorting signal for ciliary ectocytosis and indicate that ubiquitin-dependent packaging of inactive SMO contributes to the dynamic redistribution of SMO during Hedgehog signaling.

Identifiers

PMID42523455
PMCPMC13405328

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.