Evidence map›Paper›PMID 42523430›Full record

ArticlebioRxiv : the preprint server for biology2026

Abhirupa Ghosh, Evan P Brenner, Emily A Boyer, Alexander P McKim, Charmie K Vang, Ethan P Wolfe, David Mayer, Raymond L Lesiyon, Janani Ravi

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Abhirupa GhoshDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0000-0002-3980-4749
Evan P BrennerDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0009-0000-7067-8886
Emily A BoyerDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0009-0004-1718-3488
Alexander P McKimDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0000-0002-7802-7591
Charmie K VangDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0000-0001-5724-0265
Ethan P WolfeDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0009-0005-7544-7354
David MayerDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.
Raymond L LesiyonDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0009-0006-7854-6304
Janani RaviDepartment of Biomedical Informatics, Center for Health Artificial Intelligence, University of Colorado Anschutz, Aurora, CO 80045.ORCID 0000-0001-7443-925X

Funding

Computational Bioscience Program Training GrantT15LM009451 · NLM · UNIVERSITY OF COLORADO DENVER · PI Katherina Kechris-Mays, Arjun Krishnan · 2007 to 2026
$11.7M
Leveraging evolutionary analyses and machine learning to discover multiscale molecular features associated with antibiotic resistanceU01AI176414 · NIAID · UNIVERSITY OF COLORADO DENVER · PI RAVI, JANANI · 2023 to 2025
$1.4M
NIAID NIH HHS U01 AI176414NLM NIH HHS T15 LM009451
6 · The paper itself

Abstract

Motivation: Identifying bacterial antimicrobial resistance (AMR) is critical for diagnostics and treatment, but resistance is a complex trait arising from myriad mechanisms spanning multiple molecular scales. Existing computational approaches often function as black boxes and rarely explore cross-species or multi-drug patterns. We developed Results: The

Indexed as

antimicrobial resistancebacterial genomicsdrug resistance predictioninterpretable modelsmachine learningmultiscale featurespangenomicsR package

Identifiers

PMID42523430
PMCPMC13405290

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.