Evidence map›Paper›PMID 42521791›Full record

ArticleNature cell biology2026

Nuclear class 3 PI3K co-activates fasting-specific chromatin remodelling.

Nathaniel F Henneman, Genki Kawamura, Ying Luo, Catia Oliveira Dias, Jiaqi Su, Arianna Segaloni, Ivan Nemazanyy, Samuel le Cam, Calvin Rodrigues, Nicolas Kuperwasser and 6 more

Abstract read
In one paragraph

Article in Nature cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Borrowed scissors for lysosome fission.Nature cell biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Nathaniel F HennemanInstitut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France.
Genki Kawamura *Department of Chemistry, School of Science, University of Tokyo, Tokyo, Japan.
Ying Luo *Institut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France.
Catia Oliveira DiasInstitut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France.
Jiaqi SuInstitut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France.
Arianna SegaloniInstitut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France.
Ivan NemazanyyPlatform for Metabolic Analyses, Structure Fédérative de Recherche Necker, INSERM US24/CNRS, UMS 3633, Paris, France.ORCID http://orcid.org/0000-0001-8080-839X
Samuel le CamInstitut Curie, Paris Sciences et Lettres Research University, Sorbonne University, INSERM U934/CNRS UMR 3215, Paris, France.
Calvin RodriguesInstitut Curie, Paris Sciences et Lettres Research University, Sorbonne University, INSERM U934/CNRS UMR 3215, Paris, France.ORCID http://orcid.org/0000-0003-1857-9500
Nicolas KuperwasserPlatform for Genome Editing, Structure Fédérative de Recherche Necker, INSERM US24/CNRS, UMS 3633, Paris, France.
Nicolas CagnardPlatform Bio-Informatique, Université Paris Cité, Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS 3633, Paris, France.ORCID http://orcid.org/0000-0002-9051-1896
Karim HniaInstitute of Cardiovascular and Metabolic Diseases (I2MC), INSERM-UMR 1297, University Paul Sabatier, Toulouse, France.ORCID http://orcid.org/0000-0001-5298-3000
Raphaël MargueronInstitut Curie, Paris Sciences et Lettres Research University, Sorbonne University, INSERM U934/CNRS UMR 3215, Paris, France.ORCID http://orcid.org/0000-0002-9093-7977
Dominik LutterComputational Discovery Research, Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-8800-0683
Takeaki OzawaDepartment of Chemistry, School of Science, University of Tokyo, Tokyo, Japan.
Ganna PanasyukInstitut Necker-Enfants Malades, INSERM U1151/CNRS UMR 8253, Paris, France. ganna.panasyuk@inserm.fr.ORCID http://orcid.org/0000-0002-5591-848X

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 545363987 CoMeTEC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 819543
6 · The paper itself

Abstract

Transcriptional remodelling during fasting ensures metabolic adaptation and provides health benefits across species. Although several regulators of fasting-induced transcription and chromatin are known, how nutrient levels directly influence RNA polymerase II (RNAPII) and epigenetic writers remains unclear. Here we show that lipid kinase class 3 phosphatidylinositol 3-kinase (PI3K-3), a master regulator of autophagy, also functions on chromatin as a co-activator of epigenetic writers to promote RNAPII transcription. PI3K-3 overlaps with transcriptionally engaged RNAPII phosphorylated at Ser5 and with Setd1a/COMPASS, the complex that deposits the activating H3K4me3 mark. Nuclear PI3K-3 interacts with RNAPII and Setd1a/COMPASS and promotes their chromatin binding. PI3K-3 loss reduces RNAPII-S5p and H3K4me3 at selected genes, whereas PI3K-3 overexpression co-activates p300/CBP and chromatin-targeted PI3K-3 increases H3K4me3. During starvation, PI3K-3 induces autophagy genes and drives fasted liver towards ketogenesis and lipid degradation. These findings link nutrient stress to chromatin-mediated transcriptional activation.

Indexed as

Cell NucleusChromatinChromatin Assembly and DisassemblyClass III Phosphatidylinositol 3-KinasesFastingPhosphatidylinositol 3-KinasesAnimalsAutophagyEpigenesis, GeneticHEK293 CellsHistone-Lysine N-MethyltransferaseHistonesHumansLiverMiceMice, KnockoutChromatinClass III Phosphatidylinositol 3-KinasesHistone-Lysine N-MethyltransferaseHistonesp300-CBP Transcription FactorsPhosphatidylinositol 3-KinasesRNA Polymerase II

Identifiers

PMID42521791
PMCPMC13561883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.