Evidence map›Paper›PMID 42516972›Full record

ArticleFrontiers in microbiology2026

Genomic phylogeny, taxonomic classification, genetic landscape, and antibiotic resistance of clinical

Valery V Shapovalova, Elvira R Shaidullina, Natali V Ivanchik, Igor V Chebotar, Anna V Mikotina, Aida N Chagaryan, Elena Y Skleenova, Ilya S Azizov, Andrey V Romanov, Andrey V Dekhnich and 2 more

Abstract read
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In one paragraph

Article in Frontiers in microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Valery V ShapovalovaInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Elvira R ShaidullinaInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Natali V IvanchikInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Igor V ChebotarInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Anna V MikotinaInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Aida N ChagaryanInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Elena Y SkleenovaInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Ilya S AzizovInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Andrey V RomanovInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Andrey V DekhnichInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Roman S KozlovInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.
Mikhail V EdelsteinInstitute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Methods: We analyzed 323 clinical isolates from the Russian sentinel surveillance program (2002-2021). Analysis included MALDI-TOF MS identification, broth microdilution susceptibility testing to six agents [aztreonam-avibactam, colistin, levofloxacin, minocycline, tigecycline, and trimethoprim-sulfamethoxazole (TMP-SMX)], and long-read Nanopore WGS with hybrid polishing. We performed average nucleotide identity (ANI)-based classification, core- and accessory-genome comparisons, and comprehensive profiling of antibiotic resistance genes (ARGs), virulence factors (VFs), plasmids, and prophages. Results: While MALDI-TOF MS identified all isolates as Conclusion: Our findings demonstrate that current routine diagnostics fail to resolve the significant taxonomic diversity within clinical

Indexed as

antibiotic resistancebeta-lactamasesgenomic phylogenymobile genetic elements (MGEs)phosphoethanolamine transferases (PETs)plasmidsStenotrophomonastaxonomic classification

Identifiers

PMID42516972
PMCPMC13402532

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.