Evidence map›Paper›PMID 42515556›Full record

ArticleViruses2026

Read-Level Error Characterization of Rolling-Circle Amplification-Based Nanopore Sequencing of the Circular DNA Virome.

Florencia Martino, Kakhangchung Panmei, Dylan Duchen, David L Thomas, Abraham J Kandathil, Steven J Clipman

Abstract read
In one paragraph

Article in Viruses, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Florencia MartinoDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.ORCID 0009-0006-1381-6326
Kakhangchung PanmeiDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.ORCID 0009-0005-5695-6241
Dylan DuchenDepartment of Pathology, Yale School of Medicine, New Haven, CT 06519, USA.ORCID 0000-0001-5629-2012
David L ThomasDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Abraham J KandathilDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.ORCID 0000-0002-9038-134X
Steven J ClipmanDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.ORCID 0000-0002-2366-8420

Funding

Leveraging the plasma virome as a biological indicator of HIV risk and transmission networks among people who inject drugsR01DA058567 · NIDA · JOHNS HOPKINS UNIVERSITY · PI Steven J. Clipman, Abraham Kandathil · 2023 to 2026
$2.7M
Molecular Networks and Deep Learning for Targeted HIV Interventions among PWIDDP2DA056130 · NIDA · JOHNS HOPKINS UNIVERSITY · PI CLIPMAN, STEVEN J. · 2022 to 2022
$2.5M
NIDA NIH HHS DP2 DA056130NIDA NIH HHS R01 DA058567NIH HHS 1DP2DA056130-01NIH HHS R01DA058567
6 · The paper itself

Abstract

Oxford Nanopore technology enables cost-effective, portable, long-read analyses of pathogen genomes. Accurate detection and interpretation of small circular viral genomes, including

Indexed as

DNA, CircularDNA, ViralNanopore SequencingNucleic Acid Amplification TechniquesViromeAnelloviridaeGenome, ViralHigh-Throughput Nucleotide SequencingMetagenomicsSequence Analysis, DNADNA, CircularDNA, ViralAnelloviridaecircular DNA viruseslong-read sequencingM13mp18 phageplasma viromerolling-circle amplificationviral metagenomics

Identifiers

PMID42515556
PMCPMC13431522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.