Construction and Evaluation of a High-Quality Reference Panel for Dairy Goats.

Jianqing Zhao, Wei Wang, Jiayidaer Kamalibieke, Yuanpan Mu, Chenbo Shi, Jun Luo

Abstract read

In one paragraph

Article in Biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Jianqing ZhaoCollege of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China.

Wei WangShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.

Jiayidaer KamalibiekeShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.

Yuanpan MuShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.

Chenbo ShiShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.ORCID 0000-0001-8694-7198

Jun LuoShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.ORCID 0000-0002-3338-4667

Funding

Shaanxi Livestock and Poultry Breeding Double-chain Fusion Key Proiect of China 2022GD-TSLD-46-0201

6 · The paper itself

Abstract

High-quality reference panels are important resources for genotype imputation and genomic selection in dairy goats; however, dairy-goat reference panels remain limited in sample size, population representation, and standardized workflow evaluation. In this study, 1092 dairy-goat samples from multiple populations, and public resequencing datasets, were integrated to construct and evaluate a dairy-goat reference panel for low-coverage whole-genome sequencing (lcWGS) and SNP-array data. Phasing and imputation strategies were compared using Beagle 5.4, SHAPEIT5, GLIMPSE2, and a BaseVar + Beagle pipeline, and the effects of reference-panel diversity, panel size, sequencing depth, and genotyping platform were evaluated using concordance, imputation quality score (IQS), and squared dosage correlation (r

Indexed as

dairy goatgenotype imputationlow-coverage whole-genome sequencingreference panel

Identifiers

PMID42510683

DOI10.3390/biology15141135

PMCPMC13403582

What OpenQuestion holds

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LicenceCC BY

Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.