Evidence map›Paper›PMID 42509845›Full record

ArticleBiomolecules2026

Shrinking of Extracellular Space During Metabolic Stress Accelerates Amyloid-β Aggregation.

Laura F De Oliveira, Kanchana Karunarathne, Dalton Zona, Martin Muschol, Ghanim Ullah

Abstract read
In one paragraph

Article in Biomolecules, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Laura F De OliveiraDepartment of Physics, University of South Florida, Tampa, FL 33620, USA.
Kanchana KarunarathneDepartment of Physics, University of South Florida, Tampa, FL 33620, USA.
Dalton ZonaDepartment of Physics, University of South Florida, Tampa, FL 33620, USA.
Martin MuscholDepartment of Physics, University of South Florida, Tampa, FL 33620, USA.
Ghanim UllahDepartment of Physics, University of South Florida, Tampa, FL 33620, USA.ORCID 0000-0002-3716-8742

Funding

Investigating the aggregation of amyloid β during metabolic stress using multiscale modelingR21AG087910 · NIA · UNIVERSITY OF SOUTH FLORIDA · PI MUSCHOL, MARTIN, ULLAH, GHANIM · 2024 to 2025
$394k
NIA NIH HHS R21 AG087910NIH HHS R21AG087910
6 · The paper itself

Abstract

Pathological states associated with metabolic stress, such as traumatic brain injury (TBI), hypoxia, ischemic stroke, and migraine, are considered elevated risk factors for developing Alzheimer's disease (AD). However, the mechanism underlying the effect of these conditions on the progression of AD remains largely unknown. Here, we determine how metabolic stress associated with spreading depolarization (SD)-a hallmark of stroke, hypoxia, TBI, and migraine-modulates amyloid β (Aβ42) aggregation kinetics through dynamic changes in extracellular space (ECS). To achieve this, we used ThT fluorescence to determine how the formation of different Aβ42 aggregate species depends on Aβ42 concentrations. Based on this input, we build a multiscale computational framework that integrates volume regulation, including its dependence on neuronal ion homeostasis, and Aβ42 aggregation kinetics. Our model predicts that neuronal swelling during SD accelerates aggregation, where the impact of metabolic stress is highly dependent on the timing relative to aggregation progression and the initial monomer concentration. At low monomer concentrations, early SD events promote off-pathway oligomer formation, while at higher concentrations they rapidly drive fibril formation to saturation. In the absence of mature fibrils, recurrent metabolic stress events further amplify oligomer accumulation, whereas pre-existing fibril nuclei suppress oligomer formation at the expense of fibril nucleation and growth. Increasing the intensity of metabolic stress prolongs ECS shrinkage and enhances oligomer formation. These findings reveal a mechanistic link between SD-induced microenvironmental changes and Aβ aggregation dynamics, providing a quantitative framework for understanding how acute brain injury and metabolic stress may contribute to early AD pathogenesis.

Indexed as

Amyloid beta-PeptidesExtracellular SpacePeptide FragmentsProtein Aggregation, PathologicalStress, PhysiologicalAlzheimer DiseaseAnimalsHumansKineticsNeuronsProtein AggregatesAmyloid beta-Peptidesamyloid beta-protein (1-42)Peptide FragmentsProtein AggregatesaggregationAlzheimer’s diseaseAmyloid βmetablic stressspreading depolarization

Identifiers

PMID42509845
PMCPMC13406372

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.