Evidence map›Paper›PMID 42509793›Full record

ArticleBiomolecules2026

8oxoG:A Is Structurally Accommodated in the Nucleosome Core Particle, Yet Inaccessible to MUTYH-Initiated DNA Repair.

Abigayle F Vito, Justin A Ling, Julia C Ferrara, Caleb S Jacques, Natacha Gillet, Roy González-Alemán, Yuya Qiu, Mohammad Hashemian, Carlos H Trasviña-Arenas, Sheila S David and 3 more

Abstract read
In one paragraph

Article in Biomolecules, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Abigayle F VitoDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Justin A LingDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.ORCID 0000-0003-3886-8764
Julia C FerraraDepartment of Chemistry, Brown University, Providence, RI 02912, USA.ORCID 0000-0001-9990-578X
Caleb S JacquesDepartment of Chemistry, Brown University, Providence, RI 02912, USA.ORCID 0009-0004-2279-3918
Natacha GilletCNRS, ENS de Lyon, LCH, UMR 5182, 46 allée d'Italie, 69364 Lyon, France.ORCID 0000-0002-7657-6861
Roy González-AlemánUniversité de Lorraine, CNRS, UMR 7019, LPCT, F-54000 Nancy, France.
Yuya QiuUniversité de Lorraine, CNRS, UMR 7019, LPCT, F-54000 Nancy, France.
Mohammad HashemianDepartment of Chemistry, University of California, Davis, CA 95616, USA.
Carlos H Trasviña-ArenasDepartment of Chemistry, University of California, Davis, CA 95616, USA.
Sheila S DavidDepartment of Chemistry, University of California, Davis, CA 95616, USA.
Sarah DelaneyDepartment of Chemistry, Brown University, Providence, RI 02912, USA.ORCID 0000-0002-8366-3808
Emmanuelle BignonUniversité de Lorraine, CNRS, UMR 7019, LPCT, F-54000 Nancy, France.ORCID 0000-0001-9475-5049
Bret D FreudenthalDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.ORCID 0000-0003-1449-4710

Funding

Pacific Northwest Center for Cryo-EM: Equipment SupplementR24GM154185 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI James E Evans, CLAUDIA SUSANA LOPEZ · 2024 to 2026
$21.5M
TRAINING IN ENVIRONMENTAL PATHOLOGYT32ES007272 · NIEHS · BROWN UNIVERSITY · PI ZHITKOVICH, ANATOLY · 1992 to 2021
$7.5M
RECOGNITION AND REPAIR OF MISMATCHED DNA BY MUTYR01CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 2000 to 2025
$5.6M
Supplement to NIH Award 2 R35GM128562-06R35GM128562 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Bret D Freudenthal · 2018 to 2026
$4.2M
Cryo-EM for the Midwest RegionS10OD036339 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI FREUDENTHAL, BRET D · 2024 to 2024
$2.0M
NCI NIH HHS R01 CA067985NCI NIH HHS R01CA067985NIEHS NIH HHS T32 ES007272NIGMS NIH HHS R24 GM154185NIGMS NIH HHS R35 GM128562NIGMS NIH HHS R35GM128562NIH HHS S10 OD036339U.S. National Science Foundation MCB-2111680
6 · The paper itself

Abstract

Eukaryotic genomic DNA is packaged into chromatin as nucleosomes, where it remains susceptible to reactive oxygen species (ROS) that generate the mutagenic lesion 8-oxo-7,8-dihydroguanine (8oxoG). While 8-oxoguanine DNA glycosylase 1 (OGG1) can initiate repair of 8oxoG base paired with C within the nucleosome core particle (NCP) in a position- dependent manner, it is unknown whether MutY homolog (MUTYH), the DNA glycosylase that excises misincorporated A opposite 8oxoG, can initiate repair of 8oxoG:A base pairs within NCPs. To address this, we combined cryo-EM, molecular dynamics (MD) simulations, and biochemical assays. We determined that MUTYH activity on nucleosomal 8oxoG:A is strongly suppressed, with detectable excision limited to the entry/exit region. Cryo-EM structures at four superhelical locations reveal that 8oxoG adopts the

Indexed as

DNA GlycosylasesDNA RepairGuanineNucleosomesCryoelectron MicroscopyDNADNA DamageExcision RepairHumansMolecular Dynamics Simulation7,8-dihydro-8-oxoguanineDNADNA GlycosylasesGuaninemutY adenine glycosylaseNucleosomeschromatinDNA repairmutagenesisoxidative stress

Identifiers

PMID42509793
PMCPMC13406648

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.